Locus 5516

Sequence ID 2L_DroMel_CAF1
Location 15,778,486 – 15,778,587
Length 101
Max. P 0.743418
window8757

overview

Window 7

Location 15,778,486 – 15,778,587
Length 101
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 71.08
Mean single sequence MFE -21.85
Consensus MFE -11.66
Energy contribution -11.22
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.53
SVM decision value 0.46
SVM RNA-class probability 0.743418
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15778486 101 - 22407834
UAUAGCUCUGCCAGCAGGCAUUGUGUGCAGUUGCGCGAAAGCACUGAAAAGAAAAAGGUA------UAUGAAUUAAA--UCAUAAUUUGAUACAGU-AUAUAAACCACAU---
....((.((((..((((...))))..))))..))((....)).((....)).....(((.------((((.(((..(--(((.....))))..)))-.)))).)))....--- ( -22.40)
>DroSim_CAF1 29963 95 - 1
UAUAGCUCUGCCAGCAGGCAUUGUGUGCAGUUGUGCGAAAACACUGAAAAGAAAUAAGUA------UAGAAAUUAAA--UCAUAAUUUU------U-GUAAAAGGCUUAU---
...((((.(((((((..((((...)))).)))).)))......((....)).......((------(((((((((..--...)))))))------)-)))...))))...--- ( -18.20)
>DroEre_CAF1 31801 102 - 1
UAUAGCUCUGCCAGCAGGCAUUGUGUGCAGUUGU-UGAAAGCACUGAAAACGCAAACAUUUAAGAUUAGAAAUUAGA--UCACAUUUUGA----G----CUGUUCGAAAUACU
.(((((((((((....))))((((((.((((.((-.....))))))...))))))........((((........))--)).......))----)----)))).......... ( -25.60)
>DroYak_CAF1 31153 110 - 1
UAUAGCUCUGCCAGCAGGCAUUGUGUGCAGUUGUGCGAAAACACUGAAAACGAAAACAUUUAAAAUUAGAAAUAAAAAGUUAAAUGCUAA---AGCAAUAUAUUCCAAAUGGA
....(((.((((....))))((((...((((.((......))))))...))))...(((((((..(((....)))....)))))))....---))).......(((....))) ( -21.20)
>consensus
UAUAGCUCUGCCAGCAGGCAUUGUGUGCAGUUGUGCGAAAACACUGAAAACAAAAACAUA______UAGAAAUUAAA__UCAUAAUUUGA____GU_AUAUAAUCCAAAU___
....((..((((....))))..))...((((.((......))))))................................................................... (-11.66 = -11.22 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:08 2006