Locus 5515

Sequence ID 2L_DroMel_CAF1
Location 15,777,882 – 15,777,977
Length 95
Max. P 0.785207
window8756

overview

Window 6

Location 15,777,882 – 15,777,977
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -19.72
Consensus MFE -14.52
Energy contribution -14.52
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.74
SVM decision value 0.57
SVM RNA-class probability 0.785207
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15777882 95 + 22407834
AAUGUGUGACGUUUUGUCAGGCAUAAUAAUAAAAUUACAAUUGCAGCUCG-GCGACAAACAAUGCGGGCGAGAAUGUGCCAAAUCAGCGCAAAAAA------------------------
.((((.((((.....)))).))))................((((.(((..-(((........))).((((......)))).....)))))))....------------------------ ( -20.60)
>DroPse_CAF1 56847 91 + 1
AAUGUGUGACAUUGUGUCAGGCAUAAUAAUAAAAUUACAAUUGAGACUUG-GCGACAAACAAA---CGCGGAAAUGUGCAAAAUCAGCGCAAAAA-------------------------
..(((((....(((((((((((.((((............)))).).))))-)).))))....)---))))....(((((.......)))))....------------------------- ( -18.70)
>DroEre_CAF1 31147 95 + 1
AAUGUGUGACGUUUUGUCAGGCAUAAUAAUAAAAUUACAAUUGCAGCUCG-GCGACAAACAAUGCGGGCGAAAAUGUGCCAAAUCAGCGCAAAAAA------------------------
.((((.((((.....)))).))))................((((.(((..-(((........))).((((......)))).....)))))))....------------------------ ( -20.60)
>DroWil_CAF1 73667 118 + 1
GAUGUGUGACAUUUUGUCAGGCAUAAUAAUAAAAUUACAAUUGAGACUCGGGCGACAAGCAAA--UGGCAAAAAUGUGCAAAUUCAGCGCAAAUAAAAAAAACAAAAAAUACAAGUAGAA
.((((.((((.....)))).))))..........((((..(((...(....((.....))...--.).)))...(((((.......))))).......................)))).. ( -19.80)
>DroYak_CAF1 30529 95 + 1
AAUGUGUGACGUUUUGUCAGGCAUAAUAAUAAAAUUACAAUUGCAGCUCG-GCGACAAACAAUGCGGAUGAAAAUGUGCCAAAUCAGCGCAAAAAA------------------------
.((((.((((.....)))).))))................((((.(((.(-....).......(((.((....)).)))......)))))))....------------------------ ( -19.90)
>DroPer_CAF1 70701 91 + 1
AAUGUGUGACAUUGUGUCAGGCAUAAUAAUAAAAUUACAAUUGAGACUUG-GCGACAAACAAA---CGCGGAAAUGUGCAAAAUCAGCGCAAAAA-------------------------
..(((((....(((((((((((.((((............)))).).))))-)).))))....)---))))....(((((.......)))))....------------------------- ( -18.70)
>consensus
AAUGUGUGACAUUUUGUCAGGCAUAAUAAUAAAAUUACAAUUGAAACUCG_GCGACAAACAAA__GGGCGAAAAUGUGCAAAAUCAGCGCAAAAAA________________________
.((((.((((.....)))).))))..................................................(((((.......)))))............................. (-14.52 = -14.52 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:07 2006