Locus 5511

Sequence ID 2L_DroMel_CAF1
Location 15,770,750 – 15,770,851
Length 101
Max. P 0.990770
window8747

overview

Window 7

Location 15,770,750 – 15,770,851
Length 101
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 74.11
Mean single sequence MFE -19.02
Consensus MFE -5.48
Energy contribution -7.48
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.29
SVM decision value 2.23
SVM RNA-class probability 0.990770
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15770750 101 + 22407834
AAGAGCAUAUUUGAGGAGAAAUCU-------------UGUAGAAACAAUAGCAGGGAGCUCGCAAAA-AAAGAAAGGGUGCCGAAAGGAAAACAAGAAAAAUGUGAGCAAAUUUC
....((.......((((....)))-------------)((....))....)).....(((((((...-.........((.((....))...))........)))))))....... ( -19.45)
>DroPse_CAF1 49305 110 + 1
AAGCGCAUAUUUGAGAGGAAAUCUUGCGUGGAAAUGUUGUAGAAACAAUAGCAGGAAGCAGA-----AGCGGAAAAAGUGGGGAAAAAGAAACAAGAGAAAUGUGAGCAAAUUUC
..((.(((((((.........((((((((....))(((((....))))).)))))).((...-----.))............................))))))).))....... ( -19.60)
>DroEre_CAF1 23973 99 + 1
AAGAGCAUAUUUGAGGAGAAAUCU-------------UGUAGAAACAAUAGCAGGGAGCUCACCAAAAA---AAAGGCUGCAAAAAGGAAAACAAGAAAAAUGUGAGGAAAUUUC
.....(((((((.((((....)))-------------)((((.......(((.....)))..((.....---...)))))).................))))))).......... ( -13.10)
>DroAna_CAF1 19542 108 + 1
GAGCGCAUAUUUGAGACGAAAUCUUGCGUGGAAAUGUUGUAGAAACAAUAGCAACGGGAGCACAA-------AAACGAUGCAAAAAAGAAAGGAAGAAAAAUGUGAGCAAAUUUC
..((.(((((((.........((((((((.(...((((((....))))))((.......))....-------...).)))))....))).........))))))).))....... ( -19.57)
>DroPer_CAF1 61870 110 + 1
AAGCGCAUAUUUGAGAGGAAAUCUUGCGUGGAAAUGUUGUAGAAACAAUAGCAGGAAGCAGA-----AGCGGAAAAAGUGGGGAAAAAGAAACAAGAGAAAUGUGUGCAAAUUUC
..((((((((((.........((((((((....))(((((....))))).)))))).((...-----.))............................))))))))))....... ( -23.40)
>consensus
AAGCGCAUAUUUGAGAAGAAAUCUUGCGUGGAAAUGUUGUAGAAACAAUAGCAGGGAGCACAC_A__AA__GAAAAGGUGCAGAAAAGAAAACAAGAAAAAUGUGAGCAAAUUUC
..((.(((((((......................((((((....))))))((.....)).......................................))))))).))....... ( -5.48 =  -7.48 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:59 2006