Locus 5510

Sequence ID 2L_DroMel_CAF1
Location 15,765,521 – 15,765,641
Length 120
Max. P 0.500000
window8746

overview

Window 6

Location 15,765,521 – 15,765,641
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.72
Mean single sequence MFE -42.13
Consensus MFE -24.35
Energy contribution -23.93
Covariance contribution -0.41
Combinations/Pair 1.30
Mean z-score -1.45
Structure conservation index 0.58
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15765521 120 + 22407834
UGGUGGUUCGCAGUGCCGGAAAGUCCCAGAAGUGGUGCUGAGACGUAUAGGAAACUUCCAGCAUAUACAAAGUAGCCGGAUGGGUAUCGUCUGCUAAGCGGGGCAGUAGCACAACCAUUU
.(((((((....((((...(..(((((....(((((((((.((.....((....)))))))))).)))....((((.(((((.....)))))))))...)))))..).))))))))))). ( -38.20)
>DroPse_CAF1 18100 120 + 1
UGGUAGUGCGCAGCGAAGGAAAGUCCCAGAAAUGGUGCUGCGACGUGUAGGAGAGCUCCAGCAUGUAGAGCAUGGCCGGAUGGCUGUCAUCCGGCAGUUUCGGCAGCAGAAUCACCAUUU
((((.((((((((((..((.....))((....)).)))))).((((((.(((....))).))))))...)))).((((((..((((((....)))))))))))).........))))... ( -47.40)
>DroEre_CAF1 17020 120 + 1
UGGCGGUUCGUAGAGCGGGAAAGUCCCAGAAGUGGUGCUGAGACGUGUAGGAAACUUCCAGCAUAUACAAAGUAGCGGGAUGGGUAUCGUCUGCUACGCGGGGCAGCAGCACAACCAUUU
....((((........(((.....)))....(((.(((((...(((((.(((....))).)).........(((((((.(((.....)))))))))))))...))))).))))))).... ( -41.60)
>DroYak_CAF1 17370 120 + 1
UGGCGGUUCGUAGUGCGGGAAAAUCCCAGAAGUGGUGCUGAGACGUGUAGGAAACCUCCAGCAUAUACAAUGUAGCGGGAUGAGUAUCGUCUGCUAGGCGAGGCAGCAGCACAACCAUUU
....((((........(((.....)))....(((.(((((...(((((.(((....))).))..........((((((.(((.....))))))))).)))...))))).))))))).... ( -38.10)
>DroAna_CAF1 14778 120 + 1
UUUCGGUUCGCAAAGCGGGGAAAUCCCAGAAGUGGUGCUGGCCCGAGUAAGACACUUCUAGCAUGAAUAGUGAGGCCGGGUUAACAUCAUCCGCCAACCGCGGCAUCAGUACCACCAUGC
.(((....(((...)))(((....))).)))((((((((((((((.((....((((((......))..)))).(((.((((.......))))))).)))).)))..)))))))))..... ( -40.10)
>DroPer_CAF1 19799 120 + 1
UGGUAGUGCGCAGCGAAGGAAAGUCCCAGAAAUGGUGCUGCGACGUGUAGGAGAGCUCCAGCAUGUAGAGCAUGGCCGGAUGGCUGUCAUCCGGCAGUUUCGGCAGCAGAAUCACCAUUU
((((.((((((((((..((.....))((....)).)))))).((((((.(((....))).))))))...)))).((((((..((((((....)))))))))))).........))))... ( -47.40)
>consensus
UGGCGGUUCGCAGAGCGGGAAAGUCCCAGAAGUGGUGCUGAGACGUGUAGGAAACCUCCAGCAUAUACAAAGUAGCCGGAUGGGUAUCAUCCGCCAGGCGCGGCAGCAGCACAACCAUUU
....((((.........((......))....(((.(((((....((((.(((....))).))))........((((.(((((.....))))))))).......))))).))))))).... (-24.35 = -23.93 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:58 2006