Locus 5507

Sequence ID 2L_DroMel_CAF1
Location 15,762,710 – 15,762,830
Length 120
Max. P 0.547974
window8740

overview

Window 0

Location 15,762,710 – 15,762,830
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -41.98
Consensus MFE -38.12
Energy contribution -39.20
Covariance contribution 1.08
Combinations/Pair 1.13
Mean z-score -1.13
Structure conservation index 0.91
SVM decision value 0.03
SVM RNA-class probability 0.547974
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15762710 120 + 22407834
UUUCAUCCUCCUUGGACGCCAGUUCCGGAUGUUUUUUCCAUUUGUGGGAGCGACAGUUGGUGUUGCUGGCGAACGCCUUUCCGCAGUACUUGCAUACGUAGGGUCUGAGGCCGGUGUGUC
.....(((.....)))(((((((.((((.((((.((((((....)))))).)))).))))....))))))).(((((...((.(((..(((((....)))))..))).))..)))))... ( -45.40)
>DroSec_CAF1 14129 120 + 1
UUUCAUCCUCCUUGGACGCCAGUUCCGGAUGCUUCUUCCAUUUGUGGGACCUGCAGUUGGUGUUGCUGGCGAACGCCUUUCCGCAGUACUUGCAUACGUAGGGUCUGAGGCCGGUGUGUC
.....(((.....)))(((((((.((((.(((...(((((....)))))...))).))))....))))))).(((((...((.(((..(((((....)))))..))).))..)))))... ( -44.40)
>DroSim_CAF1 14322 120 + 1
UUUCAUCCUCCUUGGACGCCAGUUCCGGAUGCUUUUUCCAUUUGUGGGACCGGCAGUUGGUGUUGCUAGCAAACGCCUUUCCGCAGUACUUGCAUACGUAGGGUCUGAGGCCGGUGUGUC
...((((..(((..(((........((((((((..(((((....)))))..))))...((((((.......))))))..)))).....(((((....))))))))..)))..)))).... ( -39.20)
>DroEre_CAF1 14142 120 + 1
UUUCAUCCUCCUUGGACGCCUGUUCGGGGUGUUUUUUCCACUUGUGGGAGCGGCAGUUCGUGUUGCUGGCGAACGCCUUUCCGCAGUACUUGCACACAUAAGGUCUGAGGCCCGUGUGUC
...(((...(((..(((((((.....))))..........((((((((((.(((.((((((.......))))))))).))))((((...))))...)))))))))..)))...))).... ( -40.60)
>DroYak_CAF1 14248 120 + 1
UUUCAUCCUCCUUGGACGCCUGUUCCGGGUGCUUUUUCCAUUUGUGGGAGCGGCAGUUGGUGUUGCUGGCGAACGCCUUCCCACAGUAUUUGCAUACAUAAGGUCUGAGGCCUGUGUGUC
............((((((((((...)))))).....)))).((((((((((((((.....)))))).(((....))).)))))))).....(((((((...(((.....)))))))))). ( -40.30)
>consensus
UUUCAUCCUCCUUGGACGCCAGUUCCGGAUGCUUUUUCCAUUUGUGGGAGCGGCAGUUGGUGUUGCUGGCGAACGCCUUUCCGCAGUACUUGCAUACGUAGGGUCUGAGGCCGGUGUGUC
.....(((.....)))(((((((.((((.((((.((((((....)))))).)))).))))....))))))).(((((...((.(((..(((((....)))))..))).))..)))))... (-38.12 = -39.20 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:52 2006