Locus 5506

Sequence ID 2L_DroMel_CAF1
Location 15,760,275 – 15,760,370
Length 95
Max. P 0.543084
window8739

overview

Window 9

Location 15,760,275 – 15,760,370
Length 95
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 73.87
Mean single sequence MFE -36.82
Consensus MFE -17.82
Energy contribution -17.99
Covariance contribution 0.17
Combinations/Pair 1.19
Mean z-score -1.68
Structure conservation index 0.48
SVM decision value 0.02
SVM RNA-class probability 0.543084
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15760275 95 + 22407834
AAACCGCCGAGUACACC--AGUCGCAGAGCCAUGGAGCCGCCAGCGUCGGCCGGAAUCGCC------------GGCUCGACGCACAAGUUCCAUCCGUGCGACGAGGCU
.....((((.(....))--.((((((..(..(((((((.....(((((((((((.....))------------))).))))))....))))))))..))))))..))). ( -42.70)
>DroPse_CAF1 15246 100 + 1
---------AGUCUACCAGAGCCGGAUUGCAAUGGAGCCGCCAUCGACGGGCGGUGUUACAGCCGCUGGCAAUAAUACCACACACAAAUUUCAUCCGUGCGACGAGGCG
---------...........(((...(((((.((((...(((.......)))(((((((..(((...)))..)))))))..............)))))))))...))). ( -31.40)
>DroSec_CAF1 12088 95 + 1
AAACCACCGAGUACACC--AGCCGCAGAGCCAUGGAGCCGCCAGCGUCGGCCGGAAUUGCC------------GGCUCGACGCACAAGUUCCAUCCGUGCGAUGAGGCU
.................--((((.((..((((((((((.....(((((((((((.....))------------))).))))))....)))))))..).))..)).)))) ( -40.10)
>DroSim_CAF1 12309 95 + 1
AAACCGCCGAGUAAACC--AGCCGCAGAGCCAUGGAGCCGCCAGCGUCGGCCGGAAUUGCC------------GGCUCGACGCACAAGUUCCAUCCGUGCGAUGAGGCU
.................--((((.((..((((((((((.....(((((((((((.....))------------))).))))))....)))))))..).))..)).)))) ( -40.10)
>DroYak_CAF1 12194 95 + 1
AAACCACCGAGCACAUC--AACCGCAGAGCCAUGGAGCCGCCAGCGUCGGCCGGAAUUGCC------------GGCUCGACGCACAAAUUCCAUCCGUGCGAUGAGGCU
.........(((...((--(..((((..(..((((((......(((((((((((.....))------------))).)))))).....)))))))..)))).))).))) ( -35.20)
>DroPer_CAF1 16945 100 + 1
---------AGUCUACCAGAGCCGGAUUGCAAUGGAGCCGCCAUCGACGGGCGGUGUUACAGCCGCUGGCAAUAAUACCACACACAAAUUUCAUCCGUGCGACGAGGCA
---------...........(((...(((((.((((...(((.......)))(((((((..(((...)))..)))))))..............)))))))))...))). ( -31.40)
>consensus
AAACC_CCGAGUACACC__AGCCGCAGAGCCAUGGAGCCGCCAGCGUCGGCCGGAAUUGCC____________GGCUCGACGCACAAAUUCCAUCCGUGCGACGAGGCU
....................(((.....((.((((((((((....).)))).((((((............................)))))).))))))).....))). (-17.82 = -17.99 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:51 2006