| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,736,683 – 15,736,773 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 15,736,683 – 15,736,773 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.25 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -16.13 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15736683 90 - 22407834 AAAAACAAGAUUCAGGAUAAAGAACCUUGACGGCUUCUCAAGGCCGUACAAUUAUGGGUUUAAAUGCCAAGAGGUAAGCUUA---UGAGUACU .....((((.(((........))).))))..((((......))))((((..(((((((((....((((....))))))))))---))))))). ( -22.90) >DroPse_CAF1 71535 90 - 1 UCACAUAAUAUUCAGGAUUCCUUACCUCAACGGCUUCUCGAGGCCGUACAAUUAUGGGUUUAUAUGACAAGAGGUAAGUGUA---CGAUUUGU ....................((((((((.(((((((....)))))))..........(((.....)))..))))))))....---........ ( -23.00) >DroSec_CAF1 56182 90 - 1 AAAAACAAGAUUCAGGAUAAAGAACUUUGACGGCUUCUCAAGGCCGUACAAUUAUGGGUUUAAAUGCCAAGAGGUAAGUUUA---UGCGUUUU ..............(.(((((((((((((((((((......)))))).))).....)))))...((((....))))..))))---).)..... ( -18.50) >DroSim_CAF1 48826 90 - 1 AAAAACAAGAUUCAGGAUAAAGAACCUUGACGGCUUCUCAAGGCCGUACAAUUAUGGGUUUAAAUGCCAAGAGGUAAGUUUA---UGCGUUUU ..............(.(((((((((((((((((((......)))))).)).....))))))...((((....))))..))))---).)..... ( -20.90) >DroEre_CAF1 54954 91 - 1 UAAAA--AGAUUCAGGAUCAAGUACCUUGACGGCUUCUCAAGGCCGUACAAUUAUGGGUUUAAAUGCCAAGAGGUAUGUUUAUUAUGAUUAUU .....--....(((.(((...(((((((.((((((......)))))).........(((......)))..)))))))....))).)))..... ( -22.10) >DroPer_CAF1 68097 90 - 1 UCACAUAAUAUUCAGGAUUCCUUACCUCAACGGCUUCUCGAGGCCGUACAAUUAUGGGUUUAUAUGACAAGAGGUAAGUGUA---CGAUUUGU ....................((((((((.(((((((....)))))))..........(((.....)))..))))))))....---........ ( -23.00) >consensus AAAAACAAGAUUCAGGAUAAAGAACCUUGACGGCUUCUCAAGGCCGUACAAUUAUGGGUUUAAAUGCCAAGAGGUAAGUUUA___UGAGUUUU .......................(((((.(((((((....))))))).........(((......)))..))))).................. (-16.13 = -16.10 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:42 2006