Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,736,163 – 15,736,260 |
Length | 97 |
Max. P | 0.866518 |
Location | 15,736,163 – 15,736,260 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 86.86 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -29.31 |
Energy contribution | -30.51 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.14 |
Mean z-score | -2.46 |
Structure conservation index | 0.82 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15736163 97 + 22407834 GUAGGAUCCCGAGUGGUUAUAGCUCCUGCGGGUCC---AACUUUCCCGCGGCGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((.(((.(((((.(((((((.(((((((((((...---......))))))).......))))))))))).))))).)))...))................ ( -36.41) >DroSec_CAF1 55663 97 + 1 GUAGGAGCCCGAGUGGUUAUAGCUCCUGCGGGUCC---UACUUUCCCGCGGCGUAGUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((.(((((((((.(((((((.(((((((((((...---......))))))).......))))))))))).)))))))))...))................ ( -43.01) >DroSim_CAF1 48311 97 + 1 GUAGGAGCCCGAGUGGUUAUAGCUCCUGCGGGUCC---UACUUUCCCGCGGCGUAGUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((.(((((((((.(((((((.(((((((((((...---......))))))).......))))))))))).)))))))))...))................ ( -43.01) >DroEre_CAF1 54441 96 + 1 GUAGGAUCCCGAGUGGUUGUAGCUACUGCGGGUCC---UAC-UUCCCGCGGAGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((.(((.(((((.(((((((.(((.(((((((...---...-..))))))).(....).)))))))))).))))).)))...))................ ( -35.70) >DroYak_CAF1 60424 93 + 1 GUAGGAUCCAGAGUGGUUGUAGCUCCUGCGGGUCU-------UUCCCGCGGAGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((((..(((((..(((((((.(((((((((((...-------..))))))).(....)))))))))))).)))))..))).).................. ( -33.30) >DroAna_CAF1 45754 97 + 1 GUAGGAUCCCGAGCAGUUACAGCUCCUGCGGGUUUAUCUGUUUUCCCG-AAUGCAUUGACGCAUAACCAGUUGG-CCCCGUCACUUUGUAAUUACGGAA- ...((((((((((.(((....))).)).))))...))))......(((-((((((.(((((.....((....))-...)))))...))).))).)))..- ( -22.00) >consensus GUAGGAUCCCGAGUGGUUAUAGCUCCUGCGGGUCC___UACUUUCCCGCGGCGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU ((.(((.(((((.(((((((.(((((((((((............))))))).......))))))))))).))))).)))...))................ (-29.31 = -30.51 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:41 2006