| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,703,746 – 1,703,865 |
| Length | 119 |
| Max. P | 0.771788 |
| Location | 1,703,746 – 1,703,865 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1703746 119 + 22407834 AAAUGAGUUUAUAUAAAGAAGGAAAACAUAAAACUGUGAUUACAUUUGAUUGUCGAAGAAGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAA-AACGAUGAAACGAGAAA ......((((........................((((...(((((((.(((((((.......))))))).)))))))..))))..(((((..(....)...-..)))))))))...... ( -18.90) >DroSim_CAF1 3731 116 + 1 AAAUGAGUUUAUAUAAAGAAGGAAAACAUAAAACUGUGAUUACAUUUGAUUGUCGA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAA-AACGAUGAAACGAGAAA ......((((........................((((...(((((((.(((((((---....))))))).)))))))..))))..(((((..(....)...-..)))))))))...... ( -19.20) >DroYak_CAF1 3917 117 + 1 AAAUGAGUUUAUAUAAAGAAGGAAAACAUAAAACUGUGAUUACAUUUGAUUGUCAA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAAAGAUGAAACGAGAAA ......((((........................((((...(((((((.(((((((---....))))))).)))))))..)))).........(....)...........))))...... ( -18.10) >consensus AAAUGAGUUUAUAUAAAGAAGGAAAACAUAAAACUGUGAUUACAUUUGAUUGUCGA___AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAA_AACGAUGAAACGAGAAA ......((((........................((((...(((((((.(((((((.......))))))).)))))))..)))).........(....)...........))))...... (-17.62 = -17.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:07 2006