Locus 5498

Sequence ID 2L_DroMel_CAF1
Location 15,725,718 – 15,725,838
Length 120
Max. P 0.715789
window8723

overview

Window 3

Location 15,725,718 – 15,725,838
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.67
Mean single sequence MFE -47.07
Consensus MFE -28.94
Energy contribution -29.33
Covariance contribution 0.40
Combinations/Pair 1.48
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value 0.39
SVM RNA-class probability 0.715789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15725718 120 + 22407834
GCCCAGCCAGCCGGUAAUGGUGAUGGGGCUGAUGUCCCAGUCGAGCGCCUGCAGCAGAAUCUUCUCGUGGUUAAGGAUGUCCCGCUCUGUGCAGGCGCCAUCCGUCACAUAAGCAAACUC
((...(((....)))....((((((((((((......)))))(.(((((((((.((((........((((...........))))))))))))))))))..)))))))....))...... ( -46.10)
>DroVir_CAF1 76672 120 + 1
GCCCAGCCAGGCGGUUACUGUGAUGGGGCAAAUGUCCCAGCCGAGCGCCAGCAGCAGCAGCUUCUCAUGCUGCAGUAUGUCCCGCUCAGUGCAGGCACCAUCCGUCACAUAGGCGAAUUC
(((......)))(((..((((..((((((....))))))((.(((((...(((((.(((((.......))))).)).)))..))))).))))))..)))...((((.....))))..... ( -45.90)
>DroGri_CAF1 49660 120 + 1
GCCCAACCAGCCGAUGACGGUGAUGGGGCAGAUGUCCCAUUCGAGCGCCUGCAGCAGCAGUUUCUCGUGCUGCAGUAUGUCGUGCUCGGUGCAUGCACCAUCUGUGACGUAGGCAAAUUC
((.(.....((((....))))((((((((....)))))))).).))((((((.((((((........)))))).....((((.....((((....)))).....))))))))))...... ( -47.70)
>DroWil_CAF1 73674 120 + 1
ACCGAGCCAUCCGGUGACUGUAAUGGGACUUAUCUCCCAAUCUAGAGCCUGCAGCAGGUACUUCUCGUACUCCAGAAUAUCCUUCUCGGUGCAGGCCCCAUCAGUGACAUAGGCAAAUUC
.....(((.....((.((((..(((((.....(((........)))(((((((.(.(((((.....)))))..((((.....)))).).)))))))))))))))).))...)))...... ( -37.50)
>DroMoj_CAF1 47811 120 + 1
GCCCAGCCAGGCGGUUGCUGUGAUGGGGCAAAUGUCCCAGUUGAUUGUCUGCAGCAGCAGCUUCUCGUGCUGCAAUAUGUCGCGCUCGGUGCAGGCGCCGUCCGUGACAUAGGCGAAUUC
((((((((..(.(((((((((..((((((....))))))((.(.....).)).))))))))).)..).))))...(((((((((..(((((....)))))..))))))))))))...... ( -57.40)
>DroAna_CAF1 36546 120 + 1
GCCCAGCCAGCCAGUUAUGGUGAUGGGACUGAUUUCCCAGUCGAGGGCUUGCAGGAGGACCUUCUCGUGGUUCAGGAUGUCUCGCUCCGUGCAGGCGCCAUCCGUCACGUAGGCAAACUC
.....(((.((((....))((((((((((((......)))))..((((((((((((((((.((((........)))).)))...)))).))))))).))..))))))))).)))...... ( -47.80)
>consensus
GCCCAGCCAGCCGGUUACGGUGAUGGGGCAGAUGUCCCAGUCGAGCGCCUGCAGCAGCAGCUUCUCGUGCUGCAGUAUGUCCCGCUCGGUGCAGGCGCCAUCCGUCACAUAGGCAAAUUC
.....(((.....((.((((((.((((((....)))))).......(((((((.(.(((((.......))))).....(.....)..).)))))))..)).)))).))...)))...... (-28.94 = -29.33 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:36 2006