Locus 5497

Sequence ID 2L_DroMel_CAF1
Location 15,713,270 – 15,713,372
Length 102
Max. P 0.645928
window8722

overview

Window 2

Location 15,713,270 – 15,713,372
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.44
Mean single sequence MFE -25.65
Consensus MFE -16.78
Energy contribution -17.51
Covariance contribution 0.73
Combinations/Pair 1.12
Mean z-score -1.30
Structure conservation index 0.65
SVM decision value 0.23
SVM RNA-class probability 0.645928
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15713270 102 + 22407834
GUGUUGGUGUUGGUGCUAGUGUCGAUGUGUUUUUGGGGGAGCGUGCGUAGUAGUAAAUAGUAAAACGGCGUAGCAUACUUCUUUGGGCGCGCAAAACGCAAG
(((((((..(((....)))..))..(((((.((..((((((..(((...((.((..........)).))...)))..))))))..)).))))).)))))... ( -29.10)
>DroVir_CAF1 72302 90 + 1
GUGUAGGCGA--------GU----GUGUGUCUGUGUGUGAGCGUGCGUAGUAGUAAAUAGUAAAAUGACAUAGCAUACUUUUUUGGGCGCGCAACACACACA
....(((((.--------..----...)))))(((((((.((((((.(((.((((..((((......)).))...))))...))).))))))..))))))). ( -27.90)
>DroSec_CAF1 41649 83 + 1
-------------------UGUCGAUGUGUUUUUGGGGGAGCGUGCGUAGUAGUAAAUAGUAAAACGGCGUAGCAUACUUCUUUGGGCGCGCAAAACGCAAG
-------------------((.((.(((((.((..((((((..(((...((.((..........)).))...)))..))))))..)).)))))...)))).. ( -22.50)
>DroSim_CAF1 34382 83 + 1
-------------------UGUCGAUGUGUUUUUGGGGGAGCGUGCGUAGUAGUAAAUAGUAAAACGGCGUAGCAUACUUCUUUGGGCGCGCAAAACGCAAG
-------------------((.((.(((((.((..((((((..(((...((.((..........)).))...)))..))))))..)).)))))...)))).. ( -22.50)
>DroEre_CAF1 40717 102 + 1
GUGUUGGUGUUAGUGCUAGUGUCGGUGUGUUUUUGGGGGAGCGUGCGUAGUAGUAAAUAGUAAAACGGCGUAGCAUACUUCUUUGGGCGCGCAAAACGCAAG
(((((((..(((....)))..)).((((((..(..((((((..(((...((.((..........)).))...)))..))))))..)))))))..)))))... ( -29.80)
>DroMoj_CAF1 43576 88 + 1
GUUUAGA--A--------GU----GUGCUUGUGUGUGUGAGCGUGCGUAGUAGUAAAUAGUAAAAUACCAUAGCAUACUUUUUUGGGCGCGCAACACAAACA
(((((((--(--------((----(((((.(((.((((..((.(((......)))....))...)))))))))))))))))..))))).............. ( -22.10)
>consensus
GUGU_GG___________GUGUCGAUGUGUUUUUGGGGGAGCGUGCGUAGUAGUAAAUAGUAAAACGGCGUAGCAUACUUCUUUGGGCGCGCAAAACGCAAG
.........................((((((((.......((((((.(((.((((..((((......)).))...))))...))).)))))))))))))).. (-16.78 = -17.51 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:35 2006