Locus 5495

Sequence ID 2L_DroMel_CAF1
Location 15,710,126 – 15,710,232
Length 106
Max. P 0.850376
window8717

overview

Window 7

Location 15,710,126 – 15,710,232
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 93.42
Mean single sequence MFE -25.47
Consensus MFE -22.00
Energy contribution -21.92
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -1.80
Structure conservation index 0.86
SVM decision value 0.79
SVM RNA-class probability 0.850376
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15710126 106 + 22407834
GCACAAUGGCCACAAAGCAGCUCCAAUGUUUGCUCUCCAUUUUUGCUUGUUUUGC-UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUGUUUUUGAUUGUUCACGAUU---
(((.(((((.(((((((((((...((((.........))))...)).))))))).-)).)))))))).......((((((.(((((.......)))))))))))...--- ( -26.70)
>DroSec_CAF1 38540 106 + 1
GCACAAUGGCCACAAAGCAGCUCCAAUGUUUGCUCUCCAUUUUUGCUUGUUUUGC-UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUGUUUUUGAUUGUUCACAAUU---
(((.(((((.(((((((((((...((((.........))))...)).))))))).-)).)))))))).......((((((.(((((.......)))))))))))...--- ( -27.40)
>DroSim_CAF1 31205 106 + 1
GCACAAUGGCCACAAAGCAGCUCCAAUGUUUGCUCUCCAUUUUUGCUUGUUUUGC-UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUGUUUUUGAUUGUUCACGAUU---
(((.(((((.(((((((((((...((((.........))))...)).))))))).-)).)))))))).......((((((.(((((.......)))))))))))...--- ( -26.70)
>DroEre_CAF1 37651 109 + 1
GCACAAUGGCCACAAAGCAGCUCCAAUGUUUGCUCUCCAUUUUCGCUUGUUUUGC-UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUGUUUUUGAUUGUUCACGAUUCAC
(((.(((((.(((((((((((...((((.........))))...)).))))))).-)).)))))))).......((((((.(((((.......)))))))))))...... ( -26.00)
>DroYak_CAF1 42036 106 + 1
GCACAAUGGCCACGAAGCAGCUCCAAUGUUUGCUCUCCAUUUUUGCUUGUUUUGC-UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUAUUUUGGAUUGUUCACGAUU---
(((.(((((.(((((((((((...((((.........))))...)).))))))).-)).)))))))).......((((((.((((((.....))))))))))))...--- ( -26.90)
>DroAna_CAF1 29990 106 + 1
GCACAAUGGCCACAAAGCAGCUCCAGUGUUUGCGCUCCAUU-UUGUUUGUUUUACCCGUUCGUGUGCGUAUUUAUUUGGGUCAAUUUGUUUUGGAUAGUUCACAAUU---
(((((((((.....((((((....((((....)))).....-)))))).......))))...)))))((..(((((..((.(.....).))..)))))...))....--- ( -19.10)
>consensus
GCACAAUGGCCACAAAGCAGCUCCAAUGUUUGCUCUCCAUUUUUGCUUGUUUUGC_UGUCCGUUUGCGUAUUUAUGUGGAUCAAUUUGUUUUUGAUUGUUCACGAUU___
(((.(((((.(((((((((((...((((.........))))...)).)))))))..)).)))))))).......((((((.(((((.......)))))))))))...... (-22.00 = -21.92 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:30 2006