Locus 5494

Sequence ID 2L_DroMel_CAF1
Location 15,706,675 – 15,706,775
Length 100
Max. P 0.789225
window8716

overview

Window 6

Location 15,706,675 – 15,706,775
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 89.00
Mean single sequence MFE -29.00
Consensus MFE -24.21
Energy contribution -24.43
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -2.25
Structure conservation index 0.83
SVM decision value 0.58
SVM RNA-class probability 0.789225
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15706675 100 + 22407834
UGGCUUGAGGUGAUUUAAUGGGUCGCUUUCGUUUAUCCCGGUCGUUUUCCAUCAUUAUUGCCAACAGUUCUGGCGGAAGACUGUAUAGAUCGCCUCUUUU
......(((((((((((.((((..((....))....))))...(((((((..((..((((....))))..))..)))))))....))))))))))).... ( -32.40)
>DroSec_CAF1 35103 97 + 1
UGGCU---GGUGAUUUGAUAGUUCGCUUUCGUUUAUCCCGAUCGUUUUCCUUCAUGAUUUCCAACAGUUCUGGGGGAAGACUAUAUAGAUCUCCUCUCUU
.((..---((.((((((((((((.((..(((.......)))..)).((((((((.((((......)))).)))))))))))))).)))))).))..)).. ( -23.50)
>DroSim_CAF1 27778 100 + 1
UGGCUUGUGGUGAUUUAAUAGUUCGCUUUCGUGUAUCCCGAUCGUUUUCCUUCAUGAUUGCCAACAGUUCUGGGGGAAGACUGUAUAGAUCGCCUCGCUU
.(((....(((((((((((((((.((..(((.......)))..)).((((((((.(((((....))))).)))))))))))))).)))))))))..))). ( -31.10)
>consensus
UGGCUUG_GGUGAUUUAAUAGUUCGCUUUCGUUUAUCCCGAUCGUUUUCCUUCAUGAUUGCCAACAGUUCUGGGGGAAGACUGUAUAGAUCGCCUCUCUU
........(((((((((...........(((.......)))..(((((((..((..((((....))))..))..)))))))....)))))))))...... (-24.21 = -24.43 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:29 2006