Locus 5491

Sequence ID 2L_DroMel_CAF1
Location 15,699,074 – 15,699,169
Length 95
Max. P 0.509502
window8712

overview

Window 2

Location 15,699,074 – 15,699,169
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.24
Mean single sequence MFE -25.20
Consensus MFE -21.34
Energy contribution -22.02
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.23
Structure conservation index 0.85
SVM decision value -0.05
SVM RNA-class probability 0.509502
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15699074 95 + 22407834
GGUGGAGUGGGCAACCACUUUCCCAAACAAAUGACCAACAAUC-UGCAUUUUGAGGCCCAGCCCCUGCACACGGAAAAUUAUAAUUACAUAGACGG
((..((((((....))))))..)).................((-((......(.(((...))).)......))))..................... ( -21.40)
>DroSec_CAF1 27564 93 + 1
GGUGGAGUGGGCAACCACUUUCCCAAACAAAUGACCAACAAUC-UGCAUUUUGGGGCCCAGCCCCUUCA--CCGAAAAUUAUAAUUGCUUAGGCGG
((..((((((....))))))..))..........((.......-........(((((...)))))....--...............((....)))) ( -27.50)
>DroSim_CAF1 19919 96 + 1
GGUGGAGUGGGCAACCACUUUCCCAAAAAAAUGACCAACAAUCUUGCAUUUUGGGGCCCAGCCCCUGCACACGGAAAAUUAUAAUUGCUUAGGCGG
((..((((((....))))))..))..........((.....(((((((....(((((...)))))))))...)))...........((....)))) ( -30.70)
>DroEre_CAF1 27823 95 + 1
GGUGGAGUGGGCAACCACUUUCCCAAACAAAUGACCAACAAUC-UGCAUUUUGGGGCCCAGCUCCUGCACACGGAAAAUUAUAAUUGCUUAGAUGG
((..((((((....))))))..)).................((-((......(((((...)))))......))))..................... ( -25.30)
>DroYak_CAF1 29036 95 + 1
GGCGGAGUGGGCAACCACUUUCCCAAACAAAUGACCAACAAUC-UGCAUUUUGGAGCCCAGACCCUGCACACGAGAAAUUUUAAUUGCUUAGACGG
((..((((((....))))))..))..........((.......-((((.(((((...)))))...))))...(((.(((....))).)))....)) ( -21.10)
>consensus
GGUGGAGUGGGCAACCACUUUCCCAAACAAAUGACCAACAAUC_UGCAUUUUGGGGCCCAGCCCCUGCACACGGAAAAUUAUAAUUGCUUAGACGG
((..((((((....))))))..))....................((((....(((((...)))))))))........................... (-21.34 = -22.02 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:25 2006