Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,700,121 – 1,700,231 |
Length | 110 |
Max. P | 0.613612 |
Location | 1,700,121 – 1,700,231 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.35 |
Mean single sequence MFE | -21.43 |
Consensus MFE | -21.09 |
Energy contribution | -20.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.24 |
Structure conservation index | 0.98 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1700121 110 + 22407834 CACACAAUAGCAAUAAU--------AAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAUUUUAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA--UACC .........((......--------..((....)).....((..(((.(((((..((((.......))))...........((........)))))))..)))..)).))....--.... ( -22.00) >DroSim_CAF1 179 106 + 1 CACACAAUAGCAAUAAU--------AAGGGAAACC-AGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU--UAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA--UAC- .........((......--------..((....))-....((..(((.(((((..((((.......)))).......--..((........)))))))..)))..)).))....--...- ( -22.00) >DroYak_CAF1 227 117 + 1 CACACAAUAGCAAUAAUACAAUAUUAAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU--UAGCCAUAGACUGCGCAGUGAUGAGAUGAGCAUGAGAUAC- .........((................((....)).....((..(((.(((((..((((.......)))).......--..((........)))))))..)))..)).)).........- ( -20.30) >consensus CACACAAUAGCAAUAAU________AAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU__UAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA__UAC_ .........((................((....)).....((..(((.(((((..((((.......))))...........((........)))))))..)))..)).)).......... (-21.09 = -20.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006