Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,696,503 – 15,696,618 |
Length | 115 |
Max. P | 0.720657 |
Location | 15,696,503 – 15,696,618 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.08 |
Mean single sequence MFE | -13.60 |
Consensus MFE | -12.45 |
Energy contribution | -12.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.92 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15696503 115 - 22407834 AUUCUUGUUUUUUUAUUUUUUUUUUUGUUAAGCAUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCAUGCUC .........................(((((((((.........))))))))).................(((...((((.......)))).)))..................... ( -14.70) >DroSim_CAF1 17128 112 - 1 AUUCUUUU--UUUUAUAUU-UUUUUUGUUAAGCUUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCUUGCUC ........--.........-.....((((((((...........)))))))).................(((...((((.......)))).)))..................... ( -13.30) >DroYak_CAF1 26519 104 - 1 AUUCUUUUUU-----------UUUUUGUUAAGUUUCGGCUUCUUGCUUGACAUUAUUUUAAUUUUCAAUGCAUUUUCCUAACCCCAUGGAUUGCCUAUUCGAUUUAACCUUGCUC ..........-----------.....((((((((..(((....(((((((.((((...))))..)))).)))...(((.........)))..))).....))))))))....... ( -12.80) >consensus AUUCUUUUUUUUUUAU_UU_UUUUUUGUUAAGCUUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCUUGCUC .........................((((((((...........)))))))).................(((...(((.........))).)))..................... (-12.45 = -12.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:21 2006