Locus 5487

Sequence ID 2L_DroMel_CAF1
Location 15,666,585 – 15,666,705
Length 120
Max. P 0.999992
window8707

overview

Window 7

Location 15,666,585 – 15,666,705
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 68.44
Mean single sequence MFE -42.07
Consensus MFE -25.57
Energy contribution -27.47
Covariance contribution 1.90
Combinations/Pair 1.22
Mean z-score -2.82
Structure conservation index 0.61
SVM decision value 5.68
SVM RNA-class probability 0.999992
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15666585 120 - 22407834
UAGUGGGAACUCCCUAUCCAGGAAGAGCAGCGCUAAGUUGUUGGCGCCUCUCUGAUAAUUAAAUGAUUUAUGUAUAACCAUUUUCAACACAAAUGCCUCUUCAAAUGGAUAUUUUUCCAA
....(((....)))((((((.(((((((((((((((....)))))))................(((...(((......)))..))).......)).))))))...))))))......... ( -31.50)
>DroPse_CAF1 25885 118 - 1
CCUGGGGAGCGGGCUCUCAAAGAAGAGGAGUGCCAGGUUGUUGGAUCCAGUUUUCACAUCGAAGUUCUCAUGCUUCACAACCCUCGAAACUUGGCGCUCUUCAUGCGGAGUGCUCUCC--
...(((((((..(((((.......(((((((((((((((((((((........)).....(((((......))))).))))......)))))))))))))))....))))))))))))-- ( -46.30)
>DroPer_CAF1 23580 118 - 1
CCUGGGGAGCGGGCUCUCAAAGAAGAGGAGUGCCAGGUUGUUGGAUCCAGUUUUCACAUCGAAGCUCUCAUGCUUCACAACCCUCGAAACUUGGCGCUCUUCAUGCGGAGUGCUCUCC--
...(((((((..(((((.......(((((((((((((((((((((........)).....(((((......))))).))))......)))))))))))))))....))))))))))))-- ( -48.40)
>consensus
CCUGGGGAGCGGGCUCUCAAAGAAGAGGAGUGCCAGGUUGUUGGAUCCAGUUUUCACAUCGAAGCUCUCAUGCUUCACAACCCUCGAAACUUGGCGCUCUUCAUGCGGAGUGCUCUCC__
...((((((((....(((......(((((((((((((((.(((((........)).....(((((......)))))........)))))))))))))))))).....))))))))))).. (-25.57 = -27.47 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:20 2006