Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,663,016 – 15,663,134 |
Length | 118 |
Max. P | 0.978214 |
Location | 15,663,016 – 15,663,134 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 62.40 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -12.16 |
Energy contribution | -13.05 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.31 |
Mean z-score | -2.37 |
Structure conservation index | 0.41 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15663016 118 - 22407834 AGUAAACAAAUAUAAAAAACAUGUCCGUGCUGAGAAAUUAGUUUAA--GAAACCUCUGCUUCAGUGAACAGGGAAACAUGCGCGUUGAUGCGAGACAUUGUUGCUCGCUAUUCCGAAGGG ....................((((.((((((((....)))).....--.....(((((.(((...))))))))...)))).))))....(((((.((....)))))))....((....)) ( -23.80) >DroVir_CAF1 43087 94 - 1 AG--------------------UGGAAAGCAAAGGAACGUGUA-AG--GAAAGCUGCGCUUCAAUGCACAUGGAAACAUGCGCGUUGAUGCUCAACAAUGUU--GCCAGACA-AGGAGCA ..--------------------((...((((.......(((((-..--......))))).(((((((.((((....)))).)))))))))))...)).((((--.((.....-.)))))) ( -28.80) >DroPse_CAF1 22379 109 - 1 AGUGAGCAGA-------AAUCUUGCGAUGCGGAGAAAUUUGCAAAA--GAAAUCUCCGCUUGACUGCACAUGGAAACAUGCGCGUUGAUGCGAGACAUUGUU--UCCCUUCUCCGAAGUA .(..(((((.-------..(((((((..(((((((..(((.....)--))..)))))))(..((.((.((((....)))).))))..))))))))..)))))--..)((((...)))).. ( -37.50) >DroGri_CAF1 25516 95 - 1 AA----------------A---UGUGAAGUUGAGGAACGUGUA-AG--CGAAUCUGUGAUUUAAUGCAUAUGGAAACAUGAGCAUAGAUGCUGAGCAUUGUU--GCCAGACA-AUGAGCG ..----------------.---.((...((((.....(((...-.)--))..((((.(...((((((.((((....))))((((....))))..))))))..--.)))))))-))..)). ( -24.60) >DroWil_CAF1 43028 95 - 1 AGCAGA--GA-------AAUCUCG--A---AGAAAAUGUUCCAAAAAUGGAAAAAGCGCUUCACUGCACAUGGAAACAUGCGCGUUGAUGCGAGACAUUGUU--ACCAGUC--------- (((.((--(.-------...))).--.---....(((((((((....)))).....(((.(((.(((.((((....)))).))).))).)))..))))))))--.......--------- ( -27.60) >DroPer_CAF1 20079 109 - 1 AGUGAGCAGA-------AAUCUUGCGAUGCGGAGAAAUUUGCAAAA--GAAAUCUCCGCUUGACUGCACAUGGAAACAUGCGCGUUGAUGCGAGACAUUGUU--UCCCUUCUCCGAAGUA .(..(((((.-------..(((((((..(((((((..(((.....)--))..)))))))(..((.((.((((....)))).))))..))))))))..)))))--..)((((...)))).. ( -37.50) >consensus AGU_A___GA_______AAUCUUGCGAUGCAGAGAAAUUUGCAAAA__GAAAUCUCCGCUUCACUGCACAUGGAAACAUGCGCGUUGAUGCGAGACAUUGUU__UCCAGACU_CGAAGCA ........................................................(((.(((.(((.((((....)))).))).))).)))............................ (-12.16 = -13.05 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:17 2006