Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,633,454 – 15,633,555 |
Length | 101 |
Max. P | 0.574018 |
Location | 15,633,454 – 15,633,555 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 84.01 |
Mean single sequence MFE | -33.51 |
Consensus MFE | -25.05 |
Energy contribution | -26.55 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.24 |
Mean z-score | -1.79 |
Structure conservation index | 0.75 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15633454 101 + 22407834 GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUCAGGAAUGGAUUGCUGGACGUUGUUGGCCA ..((((((((((.....))))...))))))(((((..((((......(((((((((.-...)))))))))..(((.((....)).)))))))..)..)))). ( -34.90) >DroGri_CAF1 151763 93 + 1 GGCCAAGUGGCUGAUUAGCCUUUAAUUGGCGGCCUUUUGUUAAUUUAGAC-CGGCGACUGUUGACUAGUGACCGGAAACAUUUUG---AC-----CUGUACC .(((((..((((....)))).....)))))........(((((......(-(((..((((.....))))..)))).......)))---))-----....... ( -22.92) >DroSec_CAF1 139978 101 + 1 GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCAGUGA-UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA (((((.(..(.((....(((((......))))).................((((..(-(((.(((.........)))..))))..)))))).)..)))))). ( -35.10) >DroSim_CAF1 133525 101 + 1 GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA ((((((((.((..(((.(((((......)))))..............(((((((((.-...)))))))))..........)))..)).)).....)))))). ( -37.30) >DroEre_CAF1 137585 101 + 1 GGUCAUGCGGGUGAUUAGCCUUUAAUUUGAGGUCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUAGGGCAUGGAUUGCUGGCAGUUGUUGGUCA (..(((((.((..(((.((((((((((.((.(.....).))))))))(((((((((.-...)))))))))...))))...)))..)).))).....))..). ( -35.60) >DroYak_CAF1 147732 101 + 1 GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCUCGCCGGGUCAUCGGGGAUGGAUUGCUGGCAGUUGUUGGUCA (..(((((.((..(((.(((((......)))))(((..((.......(((((((((.-...)))))))))))..)))...)))..)).)).....)))..). ( -35.21) >consensus GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA_UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA ((((((((.(((((((.(((((......)))))..............(((((((((.....)))))))))..........))))))).)).....)))))). (-25.05 = -26.55 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:07 2006