Locus 5478

Sequence ID 2L_DroMel_CAF1
Location 15,632,972 – 15,633,063
Length 91
Max. P 0.500000
window8692

overview

Window 2

Location 15,632,972 – 15,633,063
Length 91
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -26.88
Consensus MFE -15.28
Energy contribution -17.56
Covariance contribution 2.28
Combinations/Pair 1.06
Mean z-score -1.92
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15632972 91 - 22407834
CCCAAGGAAGGUAAAAGGAAAAAUGCAAAGCC-----GAGCACAGAGGCAACUUUGCGUGCUUUUGUGCAGCGUGCUUUUGUGAGCGGCAACUUCG
......(((((((..........)))...(((-----(..((((((((((....(((.(((......))))))))))))))))..))))..)))). ( -32.70)
>DroSec_CAF1 139476 74 - 1
ACCAAGGAAAGUAA-AGGAAGAAUGCAAAGCC-----GAGCACAGAGGCAACUU-GCGUGC---------------UUUUGUGAGCGGCAACUUCG
..............-..((((..(....)(((-----(..((((((((((....-...)))---------------)))))))..))))..)))). ( -23.70)
>DroSim_CAF1 133011 89 - 1
ACCAAGGAAAGUGA-AGGAAAAAUGCAAAGCC-----GAGCACAGAGGCAACUU-GCGUGCUUUUGUGCAGCGUGCUUUUGUGAGCGGCAACUUCG
............((-(((.......)...(((-----(..((((((((((...(-((.(((......))))))))))))))))..))))..)))). ( -31.20)
>DroEre_CAF1 135364 95 - 1
CCCAAGGAAAGUAA-AGGAAAAAUGAAAAGCCGAGCCGAGCACAGAGGCAACUUUGCGUGCUUUUGUGCAUCGUGCUUUUGUGAGCGGCAACUUCG
......(((.((..-.((.....(....).))..((((..((((((((((....((((........))))...))))))))))..)))).))))). ( -29.60)
>DroYak_CAF1 147235 90 - 1
CACAGGGAAAGUAA-AGGAAAAGUGAAAAGCA-----AAGCACAGAUGGAACUUUGCGUGCUCUUGUGCAUCGGGCUUUUGUGAGCUGCAACUUCA
(((((((...((((-((.....(((.......-----...)))........))))))...).)))))).....(((((....)))))......... ( -17.22)
>consensus
CCCAAGGAAAGUAA_AGGAAAAAUGCAAAGCC_____GAGCACAGAGGCAACUUUGCGUGCUUUUGUGCAGCGUGCUUUUGUGAGCGGCAACUUCG
.............................(((.......(((((((((((........))))))))))).....((((....)))))))....... (-15.28 = -17.56 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:06 2006