| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,631,184 – 15,631,403 |
| Length | 219 |
| Max. P | 0.930833 |
| Location | 15,631,184 – 15,631,288 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 97.12 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -22.62 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15631184 104 - 22407834 CGCUCUCGCAGCUCCUUGGAUGCCGCUUAAUUGAAUGCUCAUUUCAACGAGGUCCAGCUCCUCUGCUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((.((((....)).)).))..((((((((.(((........)))..(((((.....(((...))).....)))))))))))))))............ ( -22.60) >DroSec_CAF1 137722 104 - 1 CGCUCUCGCAGCUCCUUGGCUGCCGCUUAAUUGAAUGCUCAUUUCAACGAGGUCCAGCUCCUCUGCUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((((((....)))))).....((((((((.(((........)))..(((((.....(((...))).....)))))))))))))))............ ( -25.30) >DroSim_CAF1 131253 104 - 1 CGCUCUCGCAGCUCCUUGGCUGCCGCUUAAUUGAAUGCUCAUUUCAACGAGGUCCAGCUCCUCUGCUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((((((....)))))).....((((((((.(((........)))..(((((.....(((...))).....)))))))))))))))............ ( -25.30) >DroEre_CAF1 133544 104 - 1 CGCUUUCGCAGCUCCUUGGCUGCCGCUUAAUUGAAUGCUCAUUUCAACGAGGUCCAGCUCCUCUGCUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((((((....)))))).....((((((((.(((........)))..(((((.....(((...))).....)))))))))))))))............ ( -25.30) >DroYak_CAF1 145479 104 - 1 CGCUUUCGCAGCUCCUUGGCUGCCGCUUAAUUGAAUGCUCAUUUCAUCGAGGACCAGUUUCUCUACUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((((((....)))))).))......((((((..........(((((.....))))).((((.((......)).))))......))))))........ ( -22.40) >consensus CGCUCUCGCAGCUCCUUGGCUGCCGCUUAAUUGAAUGCUCAUUUCAACGAGGUCCAGCUCCUCUGCUCUGCAACAUCGCUGGGUUUAAUUGCAUUUUUAUUUCA .((....((((((....)))))).....((((((((.(((........)))..(((((.....(((...))).....)))))))))))))))............ (-22.62 = -22.86 + 0.24)
| Location | 15,631,288 – 15,631,403 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 93.59 |
| Mean single sequence MFE | -39.84 |
| Consensus MFE | -35.44 |
| Energy contribution | -35.32 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15631288 115 + 22407834 UGUCCUGGAAUGGGUGUGUCCCGCUUUCGGUGUCCGUCCU-UUGGCCUGCCCGUCUGUCAGGGGCAUGCACAUUUGACGGCGACAUCGUCGAGGGCGUUUACUAAAUGAUUUUUAU .(((((.((..(((.....))).....(((((((((((..-.((((.(((((.(.....).))))).)).))...)))))..)))))))).))))).................... ( -41.40) >DroSec_CAF1 137826 115 + 1 UGUCCUGGAAUGGGUGUGUCCCGUUUUCGGUGUCCGUCCC-UUGGCCUGCCCGUCUGUCAGGGGCAUGCACAUUUGACGGCGACAUCGUCGAGGGCUUUUACUAAAUGAUUUUUAU .(((((.(((((((.....)))))...(((((((((((..-.((((.(((((.(.....).))))).)).))...)))))..)))))))).))))).................... ( -41.90) >DroSim_CAF1 131357 115 + 1 UGUCCUAGAAUGGGUGUGUCCCGUUUUCGGUGUCCGUCCU-UUGGCCUGCCCGUCUGUCAGGGGCAUGCACAUUUGACGGCGACAUCGUCGAGGGCGUUUACUAAAUGAUUUUUAU .(((((((((((((.....))))))))(((((((((((..-.((((.(((((.(.....).))))).)).))...)))))..))))))...))))).................... ( -41.80) >DroEre_CAF1 133648 116 + 1 UGUCCUAGAAUGGGAGUGUCCUGUUUUCGGUGUCCGUCCUUUUGGCCUGCCCGUCUGUCAGGGCCAUGCACAUUUGACGGCGACAUCGUUGGGGGCGUUUACAAAAUGAUUUUUAU .(((((((((((((.....))))))))(((((((((((....((((..((((........))))...)).))...)))))..))))))...))))).................... ( -36.60) >DroYak_CAF1 145583 115 + 1 UGUCCUCGAAUGGGAGUGUCCUGUUUUCGGUGUCCGUUCC-UUGGCCUGCCCGUCUGUCAGGGCCAUGCAUACUUUACGGCGACAUCGUCGAGGGCGUUUACAAAAUGAUUUUUAU .(((((((((((((.....)))))...((((((((((...-...((..((((........))))...)).......))))..)))))))))))))).................... ( -37.52) >consensus UGUCCUAGAAUGGGUGUGUCCCGUUUUCGGUGUCCGUCCU_UUGGCCUGCCCGUCUGUCAGGGGCAUGCACAUUUGACGGCGACAUCGUCGAGGGCGUUUACUAAAUGAUUUUUAU .(((((((((((((.....))))))))(((((((((((....((((.(((((........))).)).)).))...)))))..))))))...))))).................... (-35.44 = -35.32 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:05 2006