Locus 5476

Sequence ID 2L_DroMel_CAF1
Location 15,630,716 – 15,630,820
Length 104
Max. P 0.951321
window8689

overview

Window 9

Location 15,630,716 – 15,630,820
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 94.81
Mean single sequence MFE -33.04
Consensus MFE -28.90
Energy contribution -29.98
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 1.41
SVM RNA-class probability 0.951321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15630716 104 - 22407834
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUGUGUGAGUGUGCUAAACUGUGGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........(((((((((........((((((((((((....)))).)))).))))))))))))).((((((.(..(((.........)))..)))))))..... ( -34.10)
>DroSec_CAF1 137260 104 - 1
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUGUGUGAGUGUGCUAAAGUGUGGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........((((((((..(........((((((((((....)))).)))))).)..)))))))).((((((.(..(((.........)))..)))))))..... ( -35.40)
>DroSim_CAF1 130771 104 - 1
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUGUGUGAGUGUGCUAAAGUGUAGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........((((((....((((.....((((((((((....)))).))))))..)))))))))).((((((.(..(((.........)))..)))))))..... ( -31.10)
>DroEre_CAF1 132980 104 - 1
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUGUGUGAGUGUGCAGAAGUGUGGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........(((((((((.(((.........)))((((.(((......))).))))))))))))).((((((.(..(((.........)))..)))))))..... ( -34.90)
>DroYak_CAF1 144919 96 - 1
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUG--------UGCAAAAGUGCGGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........(((((((((.((((...(((.....)))..--------))))...))..))))))).((((((.(..(((.........)))..)))))))..... ( -29.70)
>consensus
GAGUGUAUCUGGGCCAUGUGCAACUAGUUAGCAGCUUGUGUGAGUGUGCUAAAGUGUGGUCCGGUGUCCUGCGAAACCGUAAUUAAAGGUAGCCAGGACUUUUA
........(((((((....(((.....((((((((((....)))).))))))..)))))))))).((((((.(..(((.........)))..)))))))..... (-28.90 = -29.98 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:04 2006