Locus 5474

Sequence ID 2L_DroMel_CAF1
Location 15,621,296 – 15,621,389
Length 93
Max. P 0.726451
window8686

overview

Window 6

Location 15,621,296 – 15,621,389
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -20.51
Consensus MFE -11.98
Energy contribution -11.17
Covariance contribution -0.80
Combinations/Pair 1.46
Mean z-score -2.16
Structure conservation index 0.58
SVM decision value 0.41
SVM RNA-class probability 0.726451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15621296 93 - 22407834
ACAAAGGCUUAAAAAGCGCUCAACACGAGAAAA-AAUGAGCGGAACUCUGAAAGAGAGAAAGACAAAAGGAGGUUC---UUUUGAAAGCCGAAUUAU
.....(((((......((((((...........-..))))))...((((.....)))).....(((((((....))---))))).)))))....... ( -22.52)
>DroSec_CAF1 128021 93 - 1
ACAAAGGCUUAAAAAGCGCUCAACACGAGAAAA-AAUGAGCGGAACACUGGAAGGGAGAAAGACAAAAGGAGUUUC---UUUUGAAAGCCGAAUUAC
.....(((((......((((((...........-..)))))).....................(((((((....))---))))).)))))....... ( -19.62)
>DroSim_CAF1 121545 93 - 1
ACAAAGGCUUAAAAAGCGCUCAACACGAGAAAA-AAUGAGCGGAACACUGGAAGGGAGAAAGACAAAAGGAGGUUC---UUUUGAAAGCCGAAUUAU
.....(((((......((((((...........-..)))))).....................(((((((....))---))))).)))))....... ( -19.62)
>DroEre_CAF1 123695 93 - 1
ACAAAGGCUUAAAAAGCGCUCAGCACGAGAAAA-AAUGAGCGGAUCACUGGGAGGGAGAAAGACAAAAGGAUGUUG---CUUUUAAAGCCGAAUUAU
.....(((((.(((((((((((...........-..)))))....................((((......)))))---))))).)))))....... ( -22.52)
>DroYak_CAF1 132179 92 - 1
ACAAAGGCUUAAAAAGCGCUCAACACGAGAA-A-AAUGAGCGAAAUACUGGGAGGGCGAAAGACACAAGGAGGUUC---UGUUGAAAGCCGACAUAU
.....(((((....((((((((.........-.-..)))))(((...((..(.(..(....).).)..))...)))---.)))..)))))....... ( -18.20)
>DroAna_CAF1 361390 96 - 1
ACAAAGGAUUAAAAAGCGUUCGGGUCGAAAAAAUAGUGGACGGACCAUUCAAAUG-CGGGGGGCAUCAGUAGAUGGAGUCCCAGAAAGUCGAAUUAU
......((((.....(((((..((((................)))).....))))-)..(((((..((.....))..)))))....))))....... ( -20.59)
>consensus
ACAAAGGCUUAAAAAGCGCUCAACACGAGAAAA_AAUGAGCGGAACACUGGAAGGGAGAAAGACAAAAGGAGGUUC___UUUUGAAAGCCGAAUUAU
.....(((((......((((((..............)))))).....((...........)).......................)))))....... (-11.98 = -11.17 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:00 2006