Locus 5473

Sequence ID 2L_DroMel_CAF1
Location 15,618,569 – 15,618,684
Length 115
Max. P 0.563374
window8685

overview

Window 5

Location 15,618,569 – 15,618,684
Length 115
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 75.84
Mean single sequence MFE -25.72
Consensus MFE -17.60
Energy contribution -16.75
Covariance contribution -0.85
Combinations/Pair 1.57
Mean z-score -1.02
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.563374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15618569 115 - 22407834
UCAGUAUACUGUGCGGGUUUUUAUUAUGUUUGCAUUCGCUGCGGGCCUUUUAUGUGCUCUUUCUUUUAAGGCUUAUACGGUAAGCAAAAAAC-AAUAGAAAUAUUAUUUCAACUCU
...((.(((((((..((((((..........(((.....)))(((((......).))))........))))))..))))))).)).......-((((....))))........... ( -22.80)
>DroSim_CAF1 118853 112 - 1
UCAGUAUACUGUGCGGGUUUUUAUUAUGUUUGCAUUCGCUGCGGGCCUUUUAUGUGCGCUUUCUUUUAAGGCUUAUACGGUAAGCAAAAAAC-AAUAAAAAUAA---UUAAACUCU
.(((....))).....(((((((((...(((((..(((.((..((((((....(........)....))))))..)))))...)))))....-)))))))))..---......... ( -21.80)
>DroEre_CAF1 120924 110 - 1
UCAGUAUACUGUGCGGGUUUUUAUUAUGUUUGCAUUCGCUGCGGGCCUUUUAUGUGCGCUUUCUUUUAAGGCUUAUACGGUGAGCAAAAAAA-AAUAAU---AAAAUAUCAACU--
.(((....))).(..((((((((((((.(((((..((((((.(((((((....(........)....)))))))...)))))))))))....-.)))))---)))).)))..).-- ( -25.30)
>DroWil_CAF1 178274 111 - 1
ACAAUACACAGUUAGAGUUUUCAUAAUGUUUGCAUUUGCUGCUGGUCUACUGUGUGCCCUAUCCUUCAAGGCUUAUACGGUGGGUCGAUUAC-AUAAUGCAUUA---UUG-ACUCC
..............(((((...(((((((..(((.....)))((..((((((((((.(((........)))..))))))))))..)).....-.....))))))---).)-)))). ( -28.80)
>DroYak_CAF1 123825 113 - 1
UCAGUAUACUGUACGGGUUUUUAUUAUGUUUGCAUUCGCUGCGGGCCUUUUAUGCGCUCUUUCUUUCAAAGCUUAUACGGUGAGCAAAAAAAAGAUAAU---AUAGUCUGAACUAC
...((.(((((((..((((((..........(((.....)))(((((......).))))........))))))..))))))).)).......((((...---...))))....... ( -23.50)
>DroAna_CAF1 358390 113 - 1
ACAGUACACCGUGCGGGUCUUUAUUAUGUUUGCAUUUGCGGCAGGACUUUUGUGUGCCUUAUCCUUUAAGGCCUAUACGGUGGGUAAUUGAAAAGUUAAAUGAA---UUGAAGUGU
.((((.(((((((..((((((..........((....))((((.(.(....)).)))).........))))))..)))))))..(((((....))))).....)---)))...... ( -32.10)
>consensus
UCAGUAUACUGUGCGGGUUUUUAUUAUGUUUGCAUUCGCUGCGGGCCUUUUAUGUGCCCUUUCUUUUAAGGCUUAUACGGUGAGCAAAAAAA_AAUAAAAAUAA___UUGAACUCU
...((.(((((((..((((((..........(((.....)))(((((......).))))........))))))..))))))).))............................... (-17.60 = -16.75 +  -0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:59 2006