Locus 5470

Sequence ID 2L_DroMel_CAF1
Location 15,600,673 – 15,600,765
Length 92
Max. P 0.853115
window8681

overview

Window 1

Location 15,600,673 – 15,600,765
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 70.57
Mean single sequence MFE -33.82
Consensus MFE -12.29
Energy contribution -11.68
Covariance contribution -0.61
Combinations/Pair 1.28
Mean z-score -2.08
Structure conservation index 0.36
SVM decision value 0.80
SVM RNA-class probability 0.853115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15600673 92 - 22407834
GAGGCGGCAAUUUAUAUUCAUGAGUUGUUGUAAUGCAUGUACAAG--------------------------UUGUUGGUGCUGGUUU--CCCCAAGAGCAUGCUUAUUGUUAUCCGUGAA
...((((((((((((....))))))))))))....((((.((((.--------------------------..((..(((((((...--..))...)))))))...))))....)))).. ( -20.50)
>DroPse_CAF1 156560 118 - 1
GAGGCGGCAAUUUAUAUUCAUGAGUUGUUGUGAUGCAUGUGCUGGCUGUUGCUGGAGAGUGGCGGGUGGUGCCACUGGUGCCGCUUU--CCCCCAGAGCAUGCUUAUUGUUAUCCGUGAA
...((((((((((((....))))))))))))...((((((.(((((....)).(((((((((((((((....))))..)))))))))--))..))).))))))................. ( -46.50)
>DroWil_CAF1 144750 110 - 1
GAGACAGCAAUUUAUAUUCAUGAGUUGUUGU--UGCCACUGUAAGUGGGUG-----GGGUGGGGGUGAG---UGUGAGUGCUGUUUUUGCCCCAAGAGCAUGCUUAUUGUUAUCCAUGAA
..(((((((((((((....))))))))))))--).(((((.((......))-----.)))))((((((.---.(((((((.((((((((...)))))))))))))))..))))))..... ( -37.80)
>DroMoj_CAF1 141604 94 - 1
CA-GCAGCAAUUUAUAUUCAUGAGUUGUUGCUAUGUAU-UGUAAGUUGUUGUUG-----C---------------UGCUGCUGAUU----CCCUUAAGCAUGCUUAUUGUUAUCCGUGAA
((-(((((((((((((..(((.(((....))))))...-)))))))))))))))-----.---------------....((.(((.----.(..((((....))))..)..))).))... ( -25.40)
>DroAna_CAF1 333767 113 - 1
GAGGGAGUAAUUUAUAUUCAUGAGUUAUUGUAAUUCAUUUACAAGAUGGUGCUU-----UUGCGCUUGUUGUUUUUGGUGAAGUUUU--CCCCAAGAGCAUGCUUAUUGUUAUCCGCGAA
..(((((((.....)))))((((((..((((((.....))))))...(((((..-----..)))))...(((((((((.((.....)--).))))))))).))))))......))..... ( -26.20)
>DroPer_CAF1 156231 118 - 1
GAGGCGGCAAUUUAUAUUCAUGAGUUGUUGUGAUGCAUGUGCUGGCUGUUGCUGGAGAGUGGCGGGUGGUGCCACUGGUGCCGCUUU--CCCCCAGAGCAUGCUUAUUGUUAUCCGUGAA
...((((((((((((....))))))))))))...((((((.(((((....)).(((((((((((((((....))))..)))))))))--))..))).))))))................. ( -46.50)
>consensus
GAGGCAGCAAUUUAUAUUCAUGAGUUGUUGUAAUGCAUGUGCAAGCUGUUGCUG_____UGGCGG_UGG___UAUUGGUGCUGCUUU__CCCCAAGAGCAUGCUUAUUGUUAUCCGUGAA
...((((((((((((....))))))))))))...................................................................((((..((....))..)))).. (-12.29 = -11.68 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:55 2006