Locus 5468

Sequence ID 2L_DroMel_CAF1
Location 15,597,860 – 15,597,959
Length 99
Max. P 0.557289
window8679

overview

Window 9

Location 15,597,860 – 15,597,959
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.43
Mean single sequence MFE -22.26
Consensus MFE -12.68
Energy contribution -12.59
Covariance contribution -0.08
Combinations/Pair 1.25
Mean z-score -2.29
Structure conservation index 0.57
SVM decision value 0.05
SVM RNA-class probability 0.557289
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15597860 99 + 22407834
UGCACUCGGUAAAUACAAAAUAU------AUAUACAUACAUAUAUGUAUGUUUUGCCAUGUGCAAGUUAAAUGUGCGACACAUAAAUAAUUUCACUGCCAUGGGC
.((............((((((((------(((((........)))))))))))))(((((.((((((((.(((((...)))))...)))))....)))))))))) ( -22.70)
>DroPse_CAF1 153444 87 + 1
UGCACUCGGUAAAUGCAGAAUAU------A----CUCG--------UAUAUUUUGCAAUGCGCAAGUUAAAUGUGCGACACAUAAAUAAUUUCAGUGCCAUGGGC
.(((((.((....((((((((((------(----....--------))))))))))).((((((.......))))))..............)))))))....... ( -23.60)
>DroSec_CAF1 104568 91 + 1
UGCACUCGGUAAAUGCAAAAUAU------AUACACAUA--------UAUGUUUUGCAAUGUGCAAGUUAAAUGUGCGACACAUAAAUAAUUUCACUGCCAUGGGA
....(((((((..((((((((((------(((....))--------)))))))))))..(((.((((((.(((((...)))))...)))))))))))))..))). ( -24.50)
>DroYak_CAF1 101936 97 + 1
UGCACUCGGUAAAUGCAAAAUACACGAGUAUAUACAUA--------UAUGUUUUGCCAUGUGCAUGUUAAAUGUGCGACACAUAAAUAAUUUCACUGUCAUGGGC
.((((((((((.........))).))))).........--------.........(((((..(((.....)))..)((((...............)))))))))) ( -18.46)
>DroAna_CAF1 319373 81 + 1
CGCACUUGGUAGAUGCAAAAUAU------A------------------UAUUUUGCGAUGUGCAAGUUAAAUGUGCGACACAUAAAUAAUUUAACUGCCACGGGC
.((.(.((((((.((((((((..------.------------------.))))))))(((((...((.......))..)))))...........)))))).).)) ( -20.70)
>DroPer_CAF1 153034 87 + 1
UGCACUCGGUAAAUGCAGAAUAU------A----CUCG--------UAUAUUUUGCAAUGCGCAAGUUAAAUGUGCGACACAUAAAUAAUUUCAGUGCCAUGGGC
.(((((.((....((((((((((------(----....--------))))))))))).((((((.......))))))..............)))))))....... ( -23.60)
>consensus
UGCACUCGGUAAAUGCAAAAUAU______A____CAUA________UAUAUUUUGCAAUGUGCAAGUUAAAUGUGCGACACAUAAAUAAUUUCACUGCCAUGGGC
.......((((..((((((((((........................)))))))))).((((((.......))))))..................))))...... (-12.68 = -12.59 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:53 2006