Locus 5465

Sequence ID 2L_DroMel_CAF1
Location 15,576,280 – 15,576,394
Length 114
Max. P 0.584229
window8674

overview

Window 4

Location 15,576,280 – 15,576,394
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.18
Mean single sequence MFE -47.77
Consensus MFE -28.50
Energy contribution -29.28
Covariance contribution 0.78
Combinations/Pair 1.46
Mean z-score -1.68
Structure conservation index 0.60
SVM decision value 0.10
SVM RNA-class probability 0.584229
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15576280 114 + 22407834
AAAGGCGAAGAAAGCUGCGUCUCUGGAACUCUGUACCUCCUGUGAGGAGAAGCGAGAGCUACGAAAAGAUCGAGAUGACGGCCAGAACGAGACCGGAUCUGGGAGGAGGGGCUA
............((((.(((((((.((..(((....((((.....)))).(((....)))......))))).))).)))..(((((.((....))..))))).....).)))). ( -33.60)
>DroVir_CAF1 109354 114 + 1
GAAGGCGCCGCAAGCUGCGAUUGUGGAAUUCGGUGCCGCCAGUGCGGCGCAGCGAGAGCUACGAGAAGAUUGAGAUGACAGCCAGGGUGCGACCGGAUUUGGGUGGCGGCGCCA
...((((((((....(((.(((.(((..(((((((((((....)))))))(((....))).))))....(((......)))))).))))))(((.......))).)))))))). ( -50.10)
>DroPse_CAF1 137210 114 + 1
GGAAGCGGCGCAAGCUGCGGCUCUGGAACUCCGUGCCGCCCGUGAGGCGCAGCGAGAGCUACGAGAAGAUCGAAAUGACGGCCCGGGUGCGUCCGGACCUGGGCGGCGGGGCCA
....(((((....)))))((((((((....))..(((((((....)).))(((....))).(((.....)))........((((((((.(....).))))))))))))))))). ( -61.00)
>DroGri_CAF1 92239 114 + 1
GACGGCGACGCAAGCUGCGACUGUGGAACUCAGUGCCACCGGUUCGACGCAGCGAGAGCUACGAGAAGAUUGAGAUGACGGCCCGAGUGCGGCCGGACUUGGGUGGCGGCGCCA
...((((.(((.....)))((((.......))))(((((((((((..((.(((....))).))................((((.......)))))))))..))))))..)))). ( -44.80)
>DroAna_CAF1 218707 114 + 1
AACGGCGAAGAAAACUUAGACUGUGGAACUCAGUACCGCCAGUAAGACGAAGUGAAAGCUACGAAAAAAUUGAAAUGACGGGUAGGACGCGACCGGAUCUUGGUGGCGGGGCCA
...(((.............((((.......)))).((((((.(((((((.(((....))).))...............(.(((........))).).))))).)))))).))). ( -35.40)
>DroPer_CAF1 136569 114 + 1
GGAGGCGGCGCAAGCUGCGGCUCUGGAACUCCGUGCCGCCCGUGAGGCGCAGCGAGAGCUACGAGAAGAUCGAAAUGACGGCCCGGGUGCGCCCGGACCUGGGCGGCGGGGCCA
....(((((....)))))((((((((....))..(((((((((.(.....(((....))).(((.....)))...).))((.(((((....))))).)).))))))))))))). ( -61.70)
>consensus
GAAGGCGACGCAAGCUGCGACUCUGGAACUCAGUGCCGCCAGUGAGGCGCAGCGAGAGCUACGAGAAGAUCGAAAUGACGGCCAGGGUGCGACCGGACCUGGGUGGCGGGGCCA
...((((.(((.....))).)..............(((((.......((.(((....))).)).................((((((((.(....).))))))))))))).))). (-28.50 = -29.28 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:49 2006