Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,571,999 – 15,572,101 |
Length | 102 |
Max. P | 0.532640 |
Location | 15,571,999 – 15,572,101 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -15.67 |
Energy contribution | -16.67 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.33 |
Mean z-score | -1.40 |
Structure conservation index | 0.67 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15571999 102 + 22407834 GCAUUCAAGCAGGGAAAAUUACACAAAAAUCUUUGCCGGGAUUUUCUAAUUAAAGUUUCAGCAA----GCGAAACGCGGCGCCAAAGUGAAAUUAAUGGCACUGCC ..((((..(((((((..............)))))))..))))............(((((.....----..)))))((((.((((............)))).)))). ( -22.84) >DroPse_CAF1 133640 106 + 1 GCAUUCAAGCGGAGAAAAUUACACAAAAAUCUUUGCAGGGAUUUUCUAAUUAAAGUUUCAACGAACGAACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC ...(((..(((((((..............))))))).(..(((((......)))))..)...........)))..(((((((((............))))))))). ( -27.74) >DroGri_CAF1 86886 92 + 1 GCAUCA----AGAGAAAAUUACACAA-AAUCUCGGCCAAGGUUUUCUAAUUAAAGUUUCAGCGG-----C----GUCGGCGCCAAAGUGAAAUUAAUGGCGUUGGC ......----.((((...........-..)))).(((((.(((...(((((...((....))((-----(----(....)))).......)))))..))).))))) ( -20.22) >DroMoj_CAF1 110888 92 + 1 GCAUCA----AAAGAAAAUUACACAA-AAUCUUUGGCUGGCUUUUCUAAUUAAAGUUUCAACGG-----C----CUCGGCGCCAAAGAGAAAUUAAUGGCGUUGCC ......----(((((...........-..)))))((((((((((.......))))).....)))-----)----).((((((((..((....))..)))))))).. ( -20.62) >DroAna_CAF1 205002 102 + 1 GCAUUCAAGCAAAGAAAAUUACAAAAAAAUCUGCGCCGGGAUUUUCUAAUUAAAGUUUCUGCAA----ACGAAUCGCGGGGCCAAAGUUAAAUUAAUGGCGCUGCC (.((((..(((....................)))((.(..(((((......)))))..).))..----..)))))((((.((((............)))).)))). ( -21.75) >DroPer_CAF1 132834 106 + 1 GCAUUCAAGCGGAGAAAAUUACACAAAAAUCUUUGCAGGGAUUUUCUAAUUAAAGUUUCAACGAACGAACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC ...(((..(((((((..............))))))).(..(((((......)))))..)...........)))..(((((((((............))))))))). ( -27.74) >consensus GCAUUCAAGCAGAGAAAAUUACACAAAAAUCUUUGCCGGGAUUUUCUAAUUAAAGUUUCAACGA____ACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC ........(((((((..............))))))).((((((((......))))))))................(((((((((............))))))))). (-15.67 = -16.67 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:46 2006