Locus 5462

Sequence ID 2L_DroMel_CAF1
Location 15,568,395 – 15,568,494
Length 99
Max. P 0.729990
window8670

overview

Window 0

Location 15,568,395 – 15,568,494
Length 99
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 73.15
Mean single sequence MFE -24.52
Consensus MFE -8.49
Energy contribution -8.47
Covariance contribution -0.02
Combinations/Pair 1.43
Mean z-score -2.14
Structure conservation index 0.35
SVM decision value 0.42
SVM RNA-class probability 0.729990
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15568395 99 + 22407834
--UUUGUG-CAUAAUAGCCGUGUCAAA-AA----AAUUGUUGCCUUCGGAAUGCAUGUGUAAUUUUUGCAUUCGGAUCUGGCAAAUAUUUGCG---CAAAAUGAAAGUAA
--((((((-((.((((.......(((.-..----..)))(((((.((.(((((((...........))))))).))...))))).))))))))---)))).......... ( -26.90)
>DroSec_CAF1 82163 101 + 1
GAUUUGUG-CAUAAUAGCCGUGUCUAA-AA----AAUUGUUGGCUACAGAAUGCAUGUGUAAUUUUUGCAUUCGAAUUUGGCAAAUAUUUGCG---CAAAAUGAAAGUAA
..((((((-((.((((((((((.((((-..----.....)))).))).(((((((...........)))))))......)))...))))))))---)))).......... ( -25.30)
>DroSim_CAF1 74117 101 + 1
GAUUUGUG-CAUAAUAGCCGUGUCUAA-AA----AAUUGUUGGCUGCAGAAUGCAUGUGUAAUUUUUGCAUUCGAAUUUGGCAAAUAUUUGCG---CAAAAUGAAAGUAA
..((((((-((.((((((((..((...-..----...(((.....)))(((((((...........)))))))))...))))...))))))))---)))).......... ( -24.80)
>DroEre_CAF1 75982 94 + 1
GAUGAAAG-C--------CAUUUCAAAUAA----AAUUGUUGGCUGCAGAAUGCAUGUGUAAUUUUUGCAUUCGGAUUUGGUAUUUAUUUCCG---CGAAAUUUAAGCAA
......((-(--------((...(((....----..))).)))))((.(((((((...........)))))))(((..((.....))..))))---)............. ( -20.70)
>DroYak_CAF1 79486 99 + 1
GAUUUGUG-CAUU-UGUGCGUUUCUAA-AA----AAUGCUUGGCUACAGAAUGCAUGUGUAAUU-UUGCAUUUGGAUUUGGUAACUAUUUGCG---CAAACUGAAUGUAA
.....(((-((((-(..((((((....-.)----))))).((....))))))))))........-(((((((..(.((((((((....)))).---)))))..))))))) ( -24.30)
>DroPer_CAF1 130086 106 + 1
---UCGCGCCACAGGAAAAGUAUCAAA-GAAUGGAAUUCAAAAGUCCAGAAUUUCUUUUGCAUUUUUGAAUUCUGUUACGGCAAAUAUUUGCAGAGCCAAACGAAAGUAA
---....(((....((......))...-.((((((((((((((((.(((((....))))).))))))))))))))))..)))..................((....)).. ( -25.10)
>consensus
GAUUUGUG_CAUAAUAGCCGUGUCAAA_AA____AAUUGUUGGCUACAGAAUGCAUGUGUAAUUUUUGCAUUCGGAUUUGGCAAAUAUUUGCG___CAAAAUGAAAGUAA
............................................(((.(((((((...........))))))).......((((....))))..............))). ( -8.49 =  -8.47 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:45 2006