| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,567,566 – 15,567,672 |
| Length | 106 |
| Max. P | 0.506579 |
| Location | 15,567,566 – 15,567,672 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -11.93 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15567566 106 - 22407834 ACUCUCCUUACAUUUCUACUUUGUCGCAGGCAGUCGCGUUUUCAGUUCAAUGGCAAUAAUCAGCCAACUGAAAGCCUUUGUUUAUUAGCGGUGCCACUGACAAAAU ...................(((((((..((((.(((((((((((((....((((........)))))))))))))...((.....))))))))))..))))))).. ( -30.90) >DroVir_CAF1 98516 104 - 1 AUUUCUUUUCCAUUUACACUUU-UCGCUCGUUGUCGCAUUUUCGGUUCAAUGACAAUAAUCAGCCAUGUGAAAGUCUUUGUUUAUUAGCGCAGCG-CUGAAAACAC ...................(((-((((..((((....(((.(((......))).)))...))))...)))))))....(((((.((((((...))-))))))))). ( -17.30) >DroGri_CAF1 82341 104 - 1 ACUGGUUUCCCAUUUACAAUUU-UCGCUCGCUGAAGCGUUUUCAGUUCAAUGACAAUAAUCAGCCAAGUGAAUGCAUUUGUUUAUUGGCACUGCG-CUGAUGAAAC ..(((....)))...((((..(-(((((.(((((...(((.(((......))).)))..)))))..)))))).....))))((((..((.....)-)..))))... ( -22.40) >DroEre_CAF1 75152 105 - 1 ACUCUCCUUACAUUUCUACUUUGUCGCAGGCAGUCGCGUUUUCAGUUCAAUGGCAAUAAUCAGCCAACUGAAAUCCUUUGUUUAUUAGCGCUGCCACUGGCAA-AU ...................(((((((..(((((.(((..(((((((....((((........)))))))))))..............))))))))..))))))-). ( -29.29) >DroYak_CAF1 78662 100 - 1 ACUCUCCUAACAUUUCUACUUUGUCGCAGGCAGUCGCGUUUUCAGUUCAAUGGCAAUAAUCAGCCAA------GCCUUUGUUUAUUAGCGCUGCCAGUGACAAAAA ...................((((((((.(((((.(((.....(((.....((((........)))).------....))).......)))))))).)))))))).. ( -30.30) >DroMoj_CAF1 104533 104 - 1 AUUUCUUUUCCAUUUGCACUGU-GCGCUCGUUGUCGUGCUUUCAGUUCAAUGACAAUAAUCAGCCAAGUGAAAGUCUUUGUUUAUUAGCGCAGCG-CUGAUAAAAC ...........((((.((((.(-(.(((.((((((((............))))))))....))))))))).)))).....((((((((((...))-)))))))).. ( -23.30) >consensus ACUCUCCUUACAUUUCCACUUU_UCGCACGCAGUCGCGUUUUCAGUUCAAUGACAAUAAUCAGCCAAGUGAAAGCCUUUGUUUAUUAGCGCUGCC_CUGACAAAAC ............................(((((.((((((((((.((...(((......)))...)).)))))))...((.....))))))))))........... (-11.93 = -11.60 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:44 2006