Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,687,821 – 1,687,966 |
Length | 145 |
Max. P | 0.922036 |
Location | 1,687,821 – 1,687,926 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -22.71 |
Energy contribution | -23.40 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.10 |
Mean z-score | -2.45 |
Structure conservation index | 0.72 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1687821 105 + 22407834 GAGGUUUC-AUAAUAUGCGUCAUUUGCCGGAAUUAAUUGCCAUUCAAAGCGGACAAGAUGGUCGAAAAUAGACGCG--------------UACAUAAAGAUACAAAUGUAUCUGUAUGUU ........-....((((((((...(((..((((........))))...)))(((......))).......))))))--------------))((((.((((((....)))))).)))).. ( -26.60) >DroSec_CAF1 6797 119 + 1 GAGGUUUC-AUAAUAUGCGUCAUUUGCCGGAAUUAAUUGCCAUUCAAAGCGGACAAGUUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUU ..((...(-(...((((((((...(((..((((........))))...)))(((......))).......))))))))..))...))....(((((.((((((....)))))).))))). ( -32.00) >DroSim_CAF1 7761 117 + 1 --GGUUUC-AUAAUAUGCGUCAUUUGCCGGAAUUAAUUGCCAUUCAAAGCAGACAAGUUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUU --((...(-(...((((((((...(((..((((........))))...)))(((......))).......))))))))..))...))....(((((.((((((....)))))).))))). ( -32.70) >DroYak_CAF1 7750 120 + 1 GUGGUUUCUAUAAUAUGCGUCAUUUGCCGGAAUUAAUUGCCAUUCGAAGCGAAUAAGACUGUCGAAAAUAGACGCGUAGUUGUAGCCACACACAUAAAGAUACAAAAGUAUAUGUGUGCG ((((...((((((((((((((.((((.(((..(((.((((........)))).)))..))).))))....))))))).))))))))))).((((((...((((....)))).)))))).. ( -35.60) >consensus GAGGUUUC_AUAAUAUGCGUCAUUUGCCGGAAUUAAUUGCCAUUCAAAGCGGACAAGAUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUU .............((((((((...(((..((((........))))...)))(((......))).......)))))))).............(((((.((((((....)))))).))))). (-22.71 = -23.40 + 0.69)
Location | 1,687,821 – 1,687,926 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -25.57 |
Consensus MFE | -19.41 |
Energy contribution | -19.98 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.96 |
Structure conservation index | 0.76 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1687821 105 - 22407834 AACAUACAGAUACAUUUGUAUCUUUAUGUA--------------CGCGUCUAUUUUCGACCAUCUUGUCCGCUUUGAAUGGCAAUUAAUUCCGGCAAAUGACGCAUAUUAU-GAAACCUC .(((((.((((((....)))))).))))).--------------.(((((.......(((......))).(((..((((........)))).)))....))))).......-........ ( -25.60) >DroSec_CAF1 6797 119 - 1 AACACACAGAUACAUUUGUAUCUUUAUGUACGUGGAUACAACUACGCGUCUAUUUUCGACCAACUUGUCCGCUUUGAAUGGCAAUUAAUUCCGGCAAAUGACGCAUAUUAU-GAAACCUC .(((.(.((((((....)))))).).)))..((((......))))(((((.......(((......))).(((..((((........)))).)))....))))).......-........ ( -24.50) >DroSim_CAF1 7761 117 - 1 AACACACAGAUACAUUUGUAUCUUUAUGUACGUGGAUACAACUACGCGUCUAUUUUCGACCAACUUGUCUGCUUUGAAUGGCAAUUAAUUCCGGCAAAUGACGCAUAUUAU-GAAACC-- .(((.(.((((((....)))))).).)))..((((......))))(((((.......(((......)))((((..((((........)))).))))...))))).......-......-- ( -25.40) >DroYak_CAF1 7750 120 - 1 CGCACACAUAUACUUUUGUAUCUUUAUGUGUGUGGCUACAACUACGCGUCUAUUUUCGACAGUCUUAUUCGCUUCGAAUGGCAAUUAAUUCCGGCAAAUGACGCAUAUUAUAGAAACCAC (((((((((((((....)))....))))))))))...........(((((....(((((.(((.......))))))))..((...........))....)))))................ ( -26.80) >consensus AACACACAGAUACAUUUGUAUCUUUAUGUACGUGGAUACAACUACGCGUCUAUUUUCGACCAACUUGUCCGCUUUGAAUGGCAAUUAAUUCCGGCAAAUGACGCAUAUUAU_GAAACCUC .(((.(.((((((....)))))).).)))..((((......))))(((((.......(((......))).(((..((((........)))).)))....)))))................ (-19.41 = -19.98 + 0.56)
Location | 1,687,860 – 1,687,966 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -23.45 |
Energy contribution | -23.89 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.77 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1687860 106 + 22407834 CAUUCAAAGCGGACAAGAUGGUCGAAAAUAGACGCG--------------UACAUAAAGAUACAAAUGUAUCUGUAUGUUGGCAGCUGGCCACUUGAGAUAUGCUGCACUCAACGCACAA ........(((..((((.(((((......((..((.--------------.(((((.((((((....)))))).)))))..))..)))))))))))((.....))........))).... ( -26.30) >DroSec_CAF1 6836 120 + 1 CAUUCAAAGCGGACAAGUUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUUGGCAGCUGGCCACUUGAGAUAUGCUGCACUCAGCGCACAA ........((...(((((.((((.......)))((.((((((...(((...(((((.((((((....)))))).))))))))))))))))))))))......((((....)))))).... ( -33.10) >DroSim_CAF1 7798 120 + 1 CAUUCAAAGCAGACAAGUUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUUGGCAGCUGGCCACUUGAGAUAUGCUGCACUCAGCGCACAA ........((...(((((.((((.......)))((.((((((...(((...(((((.((((((....)))))).))))))))))))))))))))))......((((....)))))).... ( -33.10) >DroYak_CAF1 7790 120 + 1 CAUUCGAAGCGAAUAAGACUGUCGAAAAUAGACGCGUAGUUGUAGCCACACACAUAAAGAUACAAAAGUAUAUGUGUGCGCGCAGCUGACCACUUGAGAUAUGCUGCACUCAACGCACAA ..((((((((......).)).))))).......((((.......((..((((((((....(((....))))))))))).))(((((................))))).....)))).... ( -29.19) >consensus CAUUCAAAGCGGACAAGAUGGUCGAAAAUAGACGCGUAGUUGUAUCCACGUACAUAAAGAUACAAAUGUAUCUGUGUGUUGGCAGCUGGCCACUUGAGAUAUGCUGCACUCAACGCACAA ....................(((.......)))((((..............(((((.((((((....)))))).)))))..(((((................))))).....)))).... (-23.45 = -23.89 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:02 2006