Locus 5459

Sequence ID 2L_DroMel_CAF1
Location 15,552,096 – 15,552,189
Length 93
Max. P 0.879970
window8666

overview

Window 6

Location 15,552,096 – 15,552,189
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.22
Mean single sequence MFE -18.53
Consensus MFE -10.81
Energy contribution -11.33
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -2.05
Structure conservation index 0.58
SVM decision value 0.91
SVM RNA-class probability 0.879970
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15552096 93 + 22407834
C-UCC-CCCAUCUCCGCUGACCU-GCCAGCCGAUCAAAUAUUUGCAUAGUAAAUGGUUUUUAUUAUUAACUGUGUAAACCUCCAUCUAAGAA---GCUC
.-...-......((.((((....-..)))).)).......((((((((((.((((((....)))))).))))))))))..............---.... ( -18.70)
>DroVir_CAF1 80819 95 + 1
C-GCGCCGUCUUUCACUC-CACU-UUGCUCUGACAAAAUAUUUGCAUAGUAAAUGGUU-UUAUUAUUAACUGUGUAAACUUUUAUUUUAGAGCUAGCUC
.-((...((.....))..-....-..(((((((..(((..((((((((((.((((((.-..)))))).))))))))))..)))...)))))))..)).. ( -21.70)
>DroPse_CAF1 109817 90 + 1
C--CC-CCCGACUCCAC---CCCACCACGCCGAUCAAAUAUUUGCAUAGUAAAUGGUUUCUAUUAUUAACUGUGUACACUUCCAUCUCGAAG---GCUC
.--..-...........---........(((...........((((((((.((((((....)))))).))))))))...(((......))))---)).. ( -15.60)
>DroEre_CAF1 60007 94 + 1
CAUUC-CCCUUCGCCGCUGACCU-GCCAGCCGAUCAAAUAUUUGCAUAGUAAAUGGUUUUUAUUAUAAACUGUGUAAACCUCCAUCUAAGAG---GCUC
.....-......(((((((....-..)))).(((......((((((((((..(((((....)))))..)))))))))).....))).....)---)).. ( -21.30)
>DroYak_CAF1 61709 93 + 1
-AGCC-CCCUUCUCCGCUGACCU-GCCAGCCGAUCAAAUAUUUGCGUAGUAAAUGGUUUUUAUUAUAAACUGUGUAAACCUCCAUCUAAGAG---GCUC
-((((-..(((.((.((((....-..)))).)).......((((((((((..(((((....)))))..)))))))))).........))).)---))). ( -18.20)
>DroPer_CAF1 109017 89 + 1
C--CC-CCCGACUCCGC---CCC-CCACGCCGAUCAAAUAUUUGCAUAGUAAAUGGUUUCUAUUAUUAACUGUGUACACUUCCAUCUCGAAG---GCUC
.--..-...((.((.((---...-....)).)))).......((((((((.((((((....)))))).))))))))..((((......))))---.... ( -15.70)
>consensus
C__CC_CCCGUCUCCGCU_ACCU_GCCAGCCGAUCAAAUAUUUGCAUAGUAAAUGGUUUUUAUUAUUAACUGUGUAAACCUCCAUCUAAGAG___GCUC
........................................((((((((((.((((((....)))))).))))))))))..................... (-10.81 = -11.33 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:41 2006