Locus 5457

Sequence ID 2L_DroMel_CAF1
Location 15,546,691 – 15,546,799
Length 108
Max. P 0.642944
window8663

overview

Window 3

Location 15,546,691 – 15,546,799
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 80.49
Mean single sequence MFE -26.98
Consensus MFE -15.05
Energy contribution -15.74
Covariance contribution 0.70
Combinations/Pair 1.22
Mean z-score -2.03
Structure conservation index 0.56
SVM decision value 0.23
SVM RNA-class probability 0.642944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15546691 108 + 22407834
UACUUUACUUUUCCGCAGUCCCCGUUACGGCAUUUCCCUAAUCGAGGACAACAUGGAACCGCCCAUGUUGUCGAGCUACACAAGGCAAUACUCCCAGCCGUAUCCAAA
.........................((((((...............((((((((((......))))))))))..(((......)))..........))))))...... ( -28.90)
>DroSec_CAF1 53671 108 + 1
UACUUUACUUUUUCGCAGUCCCCGUUACGGAAUUUCCCUAGUCGAGGACAACAUGGAACCCCCCAUGUUGUCGAGCUACACAAGGCAAUACUCCCAGCCGUAUCCAAA
.....(((...(((((.((((.(((((.((.....)).))).)).))))(((((((......)))))))).))))........(((..........))))))...... ( -26.10)
>DroSim_CAF1 52337 108 + 1
UACUUUACUUUUUCACAGUCCCCGGUACGGAAUUUCCCUAGUCGAGGACAAUAUGGAACCUCCCAUGUUGUCGAGCUACACAAGGCAAUACUCCCAGCCGUAUCCAAA
.......................(((((((.............(((((((((((((......))))))))))..(((......)))....)))....))))))).... ( -26.73)
>DroEre_CAF1 54630 108 + 1
UACUGAACUUUUCCGCAGCCCCCGUUAUGGAAUAUCAGUAAUCGAGGACAAUAUGGAACCCCCUUUGUUGUCGAGCUACACAAGACAAUACUCCCAGCCGUAUCCAAA
((((((....(((((.(((....))).)))))..)))))).....(((...(((((.........(((((((...........))))))).......))))))))... ( -24.19)
>DroYak_CAF1 56460 108 + 1
UACUAAACUUUUCCGCAGUCCCCGAUACGGAAUUUCAAUAAUAGAGGACAAUAUGGAACCCCCCAUGUUGUCGAGCUACACAAGACAAUACUCCCAACCGUAUCCAAA
.......................(((((((................((((((((((......))))))))))(((...............)))....))))))).... ( -24.86)
>DroPer_CAF1 103679 108 + 1
CUCUAAUCCCUCUCGUAGCUCCCGCUAUGAGGCGGUCGACAUUGAGGACGACCUGGAGCUGCCGAUAGUGUCCAGCUACACGCGCCACUACUCCCCGCCGUUUCCCUC
............(((((((....)))))))((((((((.(......).))))).((((.((.((...((((......)))).)).))...))))..)))......... ( -31.10)
>consensus
UACUUAACUUUUCCGCAGUCCCCGUUACGGAAUUUCCCUAAUCGAGGACAACAUGGAACCCCCCAUGUUGUCGAGCUACACAAGGCAAUACUCCCAGCCGUAUCCAAA
.........................(((((................((((((((((......))))))))))(((...............)))....)))))...... (-15.05 = -15.74 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:38 2006