Locus 5456

Sequence ID 2L_DroMel_CAF1
Location 15,545,317 – 15,545,421
Length 104
Max. P 0.544828
window8662

overview

Window 2

Location 15,545,317 – 15,545,421
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.24
Mean single sequence MFE -26.84
Consensus MFE -18.68
Energy contribution -19.85
Covariance contribution 1.17
Combinations/Pair 1.09
Mean z-score -1.46
Structure conservation index 0.70
SVM decision value 0.02
SVM RNA-class probability 0.544828
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15545317 104 - 22407834
AAAUUAUGGGGUAG-CAUUUUGCAGCCGGUGCAUUUUGCGGCGCAUAAUUUGCAUUUUUAAGCAUUUUCACAGUGCAUUGGACAUAAUUAAAAACA-ACGACACUG-
((((((((.(((.(-(.....)).)))(.(((.....))).).))))))))((........)).......((((((.(((..............))-).).)))))- ( -22.44)
>DroVir_CAF1 71185 105 - 1
AAAUUAUGUGCCACAAAUUUUGCAUGCGUUGCAUUUUGCAGCGCAUAAUUUGCAUUUUUAAGCAUUUUCACAGUGCAUUGGGCAUAAUUAAAAGCG-AAGUCGACG-
......((((((.(((....((((((((((((.....)))))))).....)))).......(((((.....))))).))))))))).......(((-....)).).- ( -30.20)
>DroPse_CAF1 103209 106 - 1
AAUUUAUGCGGCAG-CAUUUGGCAUGCGUUGCAUUUCGCGGCGCAUAAUUUGCAUUUUUAAGCAUUUUCGCAGUGCAUCGGGCAUAAUUAAGAUGGCAGGAUGGUGU
..........(((.-((((..(((((((((((.....)))))))))......((((((...((......)).((((.....))))....))))))))..)))).))) ( -31.00)
>DroGri_CAF1 58481 103 - 1
AAAUUAUGGGCCGC-AAUUUUACAUACGUUGCAUUUUGCAGCGCAUAAUUUGCAUUUUUGAGCAUUUUCACAGUGCAUUGGGCAUAAUUAAAAGAG-ACCGCGAC--
.((((((.(.((((-((.((......((((((.....))))))...)).))))........(((((.....)))))...)).))))))).......-........-- ( -21.90)
>DroMoj_CAF1 73168 95 - 1
AAAUUAUGCGGCAG-AAUUUUGCAUGCGUUGCAUUUUACAGCGCAUAAUUUGCAUUUUUAAGCAUUUUCACAGUGCAUUGGGCAUAAUUAAAAGCG-----------
.((((((((.((((-(.......((((((((.......))))))))..)))))........(((((.....))))).....)))))))).......----------- ( -24.50)
>DroPer_CAF1 102365 106 - 1
AAUUUAUGCGGCAG-CAUUUGGCAUGCGUUGCAUUUCGCGGCGCAUAAUUUGCAUUUUUAAGCAUUUUCGCAGUGCAUCGGGCAUAAUUAAGAUGGCAGGAUGGUGU
..........(((.-((((..(((((((((((.....)))))))))......((((((...((......)).((((.....))))....))))))))..)))).))) ( -31.00)
>consensus
AAAUUAUGCGGCAG_AAUUUUGCAUGCGUUGCAUUUUGCAGCGCAUAAUUUGCAUUUUUAAGCAUUUUCACAGUGCAUUGGGCAUAAUUAAAAGCG_ACGACGAUG_
.((((((((..............(((((((((.....)))))))))...............(((((.....))))).....)))))))).................. (-18.68 = -19.85 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:38 2006