Locus 5455

Sequence ID 2L_DroMel_CAF1
Location 15,541,622 – 15,541,720
Length 98
Max. P 0.814898
window8660 window8661

overview

Window 0

Location 15,541,622 – 15,541,720
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 90.17
Mean single sequence MFE -23.47
Consensus MFE -19.78
Energy contribution -20.67
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.84
SVM decision value 0.59
SVM RNA-class probability 0.793717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15541622 98 + 22407834
GUGAGGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU-UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.((((((((((-((.((......)).)))..))))))))))))))......))..)).))..... ( -25.32)
>DroSec_CAF1 48527 98 + 1
GCGAAGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU-UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.((((((((((-((.((......)).)))..))))))))))))))......))..)).))..... ( -25.32)
>DroSim_CAF1 47171 98 + 1
GCGAAGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU-UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.((((((((((-((.((......)).)))..))))))))))))))......))..)).))..... ( -25.32)
>DroEre_CAF1 49180 98 + 1
GUGAAGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU-UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.((((((((((-((.((......)).)))..))))))))))))))......))..)).))..... ( -25.32)
>DroYak_CAF1 51320 98 + 1
GUGAAGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU-UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.((((((((((-((.((......)).)))..))))))))))))))......))..)).))..... ( -25.32)
>DroAna_CAF1 163460 85 + 1
GGGA-------UGUGC---GGCAAACAAAUCCUGUAGCAUAAUUUUUUGGCAAGAACGUAAAAUUAAUUAUGCGAGAAAAGAAGAGCGGGAGAUG----
....-------.....---......((..((((((.((((((((.(((.((......)).)))..))))))))............))))))..))---- ( -14.22)
>consensus
GUGAAGGGAAAUGAGCGUGGGCAAACAAAUCCUGUCGCAUAAUUU_UUGGCAAGAACGUGAAAUUAAUUAUGCGCAGGAAGAAAAGCGGCAGGCGAAUG
..............((.((.((.......(((((.(((((((((..((.((......)).))...))))))))))))))......))..)).))..... (-19.78 = -20.67 +   0.89)

alignment

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secondary structure

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dotplot

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Window 1

Location 15,541,622 – 15,541,720
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 90.17
Mean single sequence MFE -19.03
Consensus MFE -15.37
Energy contribution -15.95
Covariance contribution 0.59
Combinations/Pair 1.15
Mean z-score -2.60
Structure conservation index 0.81
SVM decision value 0.66
SVM RNA-class probability 0.814898
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15541622 98 - 22407834
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA-AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCCUCAC
.....((.((..((......((((((((((((((.....((......))....-.))))))))).))))).......)).)).)).............. ( -20.62)
>DroSec_CAF1 48527 98 - 1
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA-AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCUUCGC
.....((.((..((......((((((((((((((.....((......))....-.))))))))).))))).......)).)).)).............. ( -20.62)
>DroSim_CAF1 47171 98 - 1
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA-AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCUUCGC
.....((.((..((......((((((((((((((.....((......))....-.))))))))).))))).......)).)).)).............. ( -20.62)
>DroEre_CAF1 49180 98 - 1
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA-AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCUUCAC
.....((.((..((......((((((((((((((.....((......))....-.))))))))).))))).......)).)).)).............. ( -20.62)
>DroYak_CAF1 51320 98 - 1
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA-AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCUUCAC
.....((.((..((......((((((((((((((.....((......))....-.))))))))).))))).......)).)).)).............. ( -20.62)
>DroAna_CAF1 163460 85 - 1
----CAUCUCCCGCUCUUCUUUUCUCGCAUAAUUAAUUUUACGUUCUUGCCAAAAAAUUAUGCUACAGGAUUUGUUUGCC---GCACA-------UCCC
----......................((((((((..((((..((....)).))))))))))))....((((.(((.....---))).)-------))). ( -11.10)
>consensus
CAUUCGCCUGCCGCUUUUCUUCCUGCGCAUAAUUAAUUUCACGUUCUUGCCAA_AAAUUAUGCGACAGGAUUUGUUUGCCCACGCUCAUUUCCCUUCAC
.....((.((..((......((((((((((((((.....................))))))))).))))).......)).)).)).............. (-15.37 = -15.95 +   0.59)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:36 2006