Locus 5453

Sequence ID	2L_DroMel_CAF1
Location	15,539,980 – 15,540,076
Length	96
Max. P	0.536773

overview

Window 6

Location	15,539,980 – 15,540,076
Length	96
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	79.43
Mean single sequence MFE	-30.06
Consensus MFE	-19.32
Energy contribution	-19.63
Covariance contribution	0.31
Combinations/Pair	1.18
Mean z-score	-1.65
Structure conservation index	0.64
SVM decision value	0.01
SVM RNA-class probability	0.536773
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15539980 96 - 22407834
GGAGGAAGCUCCAGAUUCGGUAACCAGCUCCAGCU------------CG------AGCUCCAGCUCCAGCUUCCUCCUUCACAUUCCCCCGGCAACUUGGGUUGGAUGUUCACA
((((((((((...............(((....)))------------.(------(((....)))).))))))))))...(((((((((.(....)..)))..))))))..... ( -34.10)
>DroSec_CAF1 46867 102 - 1
GGAGGAAGCUCCAGAUUCAGUAACCAGCUCCAGCU------------CCAAUUUCAGUUUCAGCUCCAGCUUCCUCCUCCACAUUACCACGGCAACUUGGGUUGGAUGUUCACA
((((((((((...............((((..((((------------........))))..))))..))))))))))...(((((.(((.(....).)))....)))))..... ( -28.63)
>DroEre_CAF1 47452 114 - 1
GGAGGAAGCUCCAGAUUCAGUAACCAGCUCCAUCUCGAGCUCCAGCUCCAGUUUCAGUUUCGGCUCCGGCUUCCUCCUCCACUUUUUUCCGGCAACUUCGGUUGGAUGUUCACA
((((((((((..((((..(((.....)))..)))).(((((..((((........))))..))))).))))))))))...............((((....)))).......... ( -34.60)
>DroYak_CAF1 49622 111 - 1
AGAGGAAGCUCCAGAUUCGGUAACCAGCUCCAACUCUAGCA---GCAGCAGUUUUAGUUUCAGCUUCGGCUCCCUCCUCCACAUUCCCCCGGCAACUUCGGUUUGGUGUUCACA
.((((.((((((......)).....((((..((((..(((.---......)))..))))..))))..)))).))))....(((((...((((.....))))...)))))..... ( -22.90)
>consensus
GGAGGAAGCUCCAGAUUCAGUAACCAGCUCCAGCU____________CCAGUUUCAGUUUCAGCUCCAGCUUCCUCCUCCACAUUCCCCCGGCAACUUCGGUUGGAUGUUCACA
((((((((((...............((((..((((....................))))..))))..))))))))))...............((((....)))).......... (-19.32 = -19.63 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:32 2006