| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,534,416 – 15,534,508 |
| Length | 92 |
| Max. P | 0.628223 |
| Location | 15,534,416 – 15,534,508 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -22.95 |
| Energy contribution | -22.98 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15534416 92 - 22407834 CGCGGAAAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUCGCACAC-UUCUCGCUCUGUUU------UC---C------A------------ .((((((((((((((((((((((...(....)....)))))).)))))....))))..))))))).........-..............------..---.------.------------ ( -25.60) >DroVir_CAF1 56328 101 - 1 CGCGGGCAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUCGCGCAU-UUCUUCUACUGUUU------UC---U------CCGUGCAGG-A-- .((((((((((((((((((((((...(....)....)))))).)))))....)))))))..))))...((((..-..............------..---.------..))))...-.-- ( -30.90) >DroGri_CAF1 46987 104 - 1 CGCGGGUAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGUGCGUCAUUAAGUUGUUUCCGCUUCGCUCAU-UUCUUCUACUGUUU------UC---A------GCUGGCUGGGAUG .((((((((((((((((((((((...(....)....)))))).)))))....))))))..)))))......(((-..(..((((((...------.)---)------).)))..)..))) ( -30.00) >DroWil_CAF1 58903 101 - 1 UGCUG-AAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUCGCACAAUUUCUUGUUCUGUUC------UGUUCUUUUUUUU------------ .((.(-((((..(((((((((((...(....)....)))))).))))).........))))).))...(.((((....)))).).....------.............------------ ( -19.30) >DroMoj_CAF1 58192 107 - 1 AGCGGGUAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUGGCGCAU-UCCUUCCACUGUUCCACUGCUC---U------CCACUGAGU-A-- (((((((((((((((((((((((...(....)....)))))).)))))....))))))..))))))(((.(((.-.........))).))).(((((---.------.....))))-)-- ( -32.10) >DroAna_CAF1 141541 90 - 1 CGCGGAAAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUCGCGCAC-UU--UGCUCUGUUU------UC---C------A------------ ...(((((((....((.((((((...(....)....))))))(((((.....((((.......)))))))))..-..--.))...))))------))---)------.------------ ( -27.90) >consensus CGCGGGAAACUUAUGUGGGUGCUUAAGUGAACCAUUAGCGCCGCGCGUCAUUAAGUUGUUUCCGCUUCGCGCAU_UUCUUCCACUGUUU______UC___U______A____________ .(((((.((((((((((((((((...(....)....)))))).)))))....)))))...)))))....................................................... (-22.95 = -22.98 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:30 2006