Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,533,663 – 15,533,759 |
Length | 96 |
Max. P | 0.833185 |
Location | 15,533,663 – 15,533,759 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.02 |
Mean single sequence MFE | -24.66 |
Consensus MFE | -19.28 |
Energy contribution | -19.56 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.16 |
Mean z-score | -1.85 |
Structure conservation index | 0.78 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15533663 96 + 22407834 UAUCGAAAUAUGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCUACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC ..((((........)))).....((((((((((((.(((((.......))))).))))))...(((((((((.....)))).)))))..)))))). ( -25.40) >DroSec_CAF1 38720 96 + 1 UUUCGAAAUAAGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC .(((((........)))))....((((((((((((.(((.(.......).))).))))))...(((((((((.....)))).)))))..)))))). ( -23.90) >DroSim_CAF1 38840 96 + 1 UUUCGAAAUAUGUAUUGAAUUAAUUUUUGAGGACAAUGUGACUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC .(((((........)))))........((((((((.(((((......)).))).)))))))).(((((((((.....)))).)))))......... ( -20.90) >DroEre_CAF1 40269 95 + 1 CUUAGAAAUUUGUAUUGAAUUAGUUUGUGAGGACACAGUGGUUU-UUUCGACAGUGUUCAUACCUACUGGGCACACCGCUCAAGUGGUGCACAAAC ......................(((((((.((((((.((.(...-...).)).)))))).((((.(((((((.....)))).)))))))))))))) ( -27.30) >DroYak_CAF1 42645 96 + 1 UUUGUAAAUUUGUAUUGAAUUAACUUGUGAGGACAAAGUGGCCUUUUCCGACAGUGUCCUUAUCUACUUGGCUUACCGCUCAAGUGGUACACAAAC ........(((((.............(((((((((..((((......)).))..)))))))))(((((((((.....)).)))))))...))))). ( -25.80) >consensus UUUCGAAAUAUGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC .......................((((((.(((((.(((((......)).))).)))))....(((((((((.....)))).)))))..)))))). (-19.28 = -19.56 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:27 2006