Locus 5447

Sequence ID 2L_DroMel_CAF1
Location 15,524,948 – 15,525,051
Length 103
Max. P 0.994665
window8647

overview

Window 7

Location 15,524,948 – 15,525,051
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.79
Mean single sequence MFE -40.62
Consensus MFE -36.96
Energy contribution -36.36
Covariance contribution -0.60
Combinations/Pair 1.18
Mean z-score -1.86
Structure conservation index 0.91
SVM decision value 2.50
SVM RNA-class probability 0.994665
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15524948 103 - 22407834
GCAGUUGUCGGUUUGCCAUCUUGGCCAUCCUGGCGCCUUGGCUCGAAAAAUCUUGCGCUAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((..((((.....)).))..)))))(((.((((((((...((((((.((.((((((......)))))).)).))).)))..)))))).)).))) ( -37.00)
>DroSec_CAF1 29855 103 - 1
GCAGAUGUCGGUUUGCCAUCUUGGCCAACCUGGCGCCUUGGCUCGAAAAAUCCUGUGCUAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((((.(((.....))).)))).)))(((.((((((((...((((((.((.((((((......)))))).)).))).)))..)))))).)).))) ( -42.00)
>DroSim_CAF1 30015 103 - 1
GCAGAUGUCGGUUUGCCAUCUUGGCCAUCCUGGCGCCUUGGCUCGAAAAAUCCUGCGCUAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((..((((.....)).))..)))))(((.((((((((...((((((.((.((((((......)))))).)).))).)))..)))))).)).))) ( -39.80)
>DroEre_CAF1 30077 103 - 1
GCAGAUGUCGGCUUGCCAUCUUGGCCAUCCUGGCUCCUUGGCUGGGAAAAUCCCGUGCGAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((((((((.....)))..(((..(((....)))..)))..((((((.(((((((((......))))))))).))).)))....))))...)))) ( -42.10)
>DroYak_CAF1 30788 103 - 1
GCAGAUGCCGGUUUGCUAUCUUAGCCAUCCUGGCUCCUUGGCUCGGAAAGUCCUGUGCGAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((..(((((...))).))..))))).((.((((((((...((((((.(((((((((......))))))))).))).)))..)))))).)).)). ( -42.20)
>consensus
GCAGAUGUCGGUUUGCCAUCUUGGCCAUCCUGGCGCCUUGGCUCGAAAAAUCCUGUGCUAUUGCUGUUUGUGGCAAUCGCUCGGCGAUGCUUGAGCACACGGC
......(((((..((((.....)).))..)))))(((.((((((((...((((((.((.((((((......)))))).)).))).)))..)))))).)).))) (-36.96 = -36.36 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:23 2006