Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,518,985 – 15,519,087 |
Length | 102 |
Max. P | 0.744424 |
Location | 15,518,985 – 15,519,087 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -26.32 |
Energy contribution | -26.48 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -1.95 |
Structure conservation index | 0.74 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15518985 102 + 22407834 CAU--GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAAGGGAGAGGACGAG ...--.......((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))....(((....))))))))))). ( -36.00) >DroPse_CAF1 71280 94 + 1 CGUCUGCUGCUUUUGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCCAGGCAGGGGGACU----------GGGCCAC ........((((..((((((.((((...((((((..((..(((((...........))))).))..))))))....)))))))))).----------))))... ( -34.10) >DroSim_CAF1 24168 102 + 1 CAU--GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAAGGGAGAGGGCGAG ...--.......((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))....(((....))))))))))). ( -35.40) >DroEre_CAF1 24062 101 + 1 CUG--GGUCC-GUCGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCGAGAGGAGAGGACGAG ...--....(-(((.(((((((((....((((((..((..(((((...........))))).))..)))))).....))))))).(((....))))).)))).. ( -36.20) >DroYak_CAF1 24369 102 + 1 CUG--GGUCCCUUCGUGUUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAGAGGAGAGGACGAG ...--.((((((((.(((((((((....((((((..((..(((((...........))))).))..)))))).....)))))))...))...)))).))))... ( -36.40) >DroPer_CAF1 69859 94 + 1 CGUCUGCUGCUUUUGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCACAGGCAGGGGGACU----------GGGCCAC ........((((..((((((.((((..(((((((..((..(((((...........))))).))..)))))))...)))))))))).----------))))... ( -35.90) >consensus CAU__GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAA__GGAGAGGACGAG ............((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))))).(((.......)))))))). (-26.32 = -26.48 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:20 2006