Locus 5444

Sequence ID 2L_DroMel_CAF1
Location 15,514,199 – 15,514,290
Length 91
Max. P 0.772470
window8643

overview

Window 3

Location 15,514,199 – 15,514,290
Length 91
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.54
Mean single sequence MFE -27.17
Consensus MFE -17.66
Energy contribution -19.22
Covariance contribution 1.56
Combinations/Pair 1.09
Mean z-score -2.51
Structure conservation index 0.65
SVM decision value 0.53
SVM RNA-class probability 0.772470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15514199 91 - 22407834
CAUACAGCCAUACAGAAUGGCAUCGAAAUGGCAGCGAAAUGGCCAAAAGCGACAUCUCGCGAACGUGCCUCACAUGCCG---CCAAAUUCGAUG-----------------
......(((((.....)))))((((((.((((.(((....((((....((((....))))....).))).....))).)---)))..)))))).----------------- ( -30.60)
>DroPse_CAF1 66166 110 - 1
CA-GCAGCCAAACAAAAUGGCAGCGGAACGGCAUCGAAAUGGCCAAAAGCGACAUCUCGCGAACGUGCCGCACAUUCCCAUUCCCAUUUUCAUUCCCCAUUCCCACCCCUC
..-((.((((.......)))).))((((.((.((.(((((((......((((....))))(((.(((...))).)))......))))))).))...)).))))........ ( -25.60)
>DroSec_CAF1 19316 79 - 1
CA-GCAGCCAUACAGAAUGGCAUCGAA-----------AUGGCCAAAAGCGUCAUCUCGCGAACGUGCCUCACAUGCAG---CCAAAUUCGAUG-----------------
..-...(((((.....)))))((((((-----------.((((.....(((......)))...((((.....))))..)---)))..)))))).----------------- ( -22.80)
>DroSim_CAF1 19390 90 - 1
CA-GCAGCCAUACAGAAUGGCAUCGAAAUGGCAGCGAAAUGGCCAAAAGCGACAUCUCGCGAACGUGCCUCACAUGCCG---CCAAAUUCGAUG-----------------
..-...(((((.....)))))((((((.((((.(((....((((....((((....))))....).))).....))).)---)))..)))))).----------------- ( -30.60)
>DroEre_CAF1 19212 90 - 1
CA-GCAGCCAUACAGAAUGGCAGCGAAAUGGCAGCGAAAUGGCCAAAAGCGACAUCACGCGAACGUGCCUCACAUGCCG---CCAAAUUCGAUG-----------------
..-((.(((((.....))))).))(((.((((.(((....((((....(((......)))....).))).....))).)---)))..)))....----------------- ( -27.20)
>DroYak_CAF1 19477 90 - 1
CA-GCAGCCAUACAGAAUGGCAUCGAAAUGGCACCGAAAUGGCCAAAAGCGACAUCUCGCGAACGUGCCUCACAUGCCG---CCAAAUUCGAUG-----------------
..-...(((((.....)))))((((((.((((........((((....((((....))))....).))).........)---)))..)))))).----------------- ( -26.23)
>consensus
CA_GCAGCCAUACAGAAUGGCAUCGAAAUGGCAGCGAAAUGGCCAAAAGCGACAUCUCGCGAACGUGCCUCACAUGCCG___CCAAAUUCGAUG_________________
......(((((.....)))))((((((.(((((.......((((....(((......)))....).))).....)))))........)))))).................. (-17.66 = -19.22 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:19 2006