| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,507,812 – 15,507,902 |
| Length | 90 |
| Max. P | 0.691977 |
| Location | 15,507,812 – 15,507,902 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15507812 90 - 22407834 UGCUCUCUACGAGAA--------------CGA-AAGGGGAAAUGUAUUAGAAACGGAAACAGCUCAAGGGAAACACUUGAUGGGGCAAAAUACGAUUACGAUUAC----- ((((((.((((....--------------(..-..)......))))........(....)...((((((....).))))).))))))..................----- ( -16.70) >DroPse_CAF1 58880 105 - 1 UGCCCUGGGCCAGCGUGGCGAGGGGCAGGCGAGGCGGGGCAAUGUAUUAGAAACGGAAACAGCUCGAGGGAAACACUUGAAGAAGCAAAAUACGAUUACGAUUAC----- ((((((..(((.((.((.(....).)).))..))))))))).((((((......(....).((((((((....).)))))....))..))))))...........----- ( -34.40) >DroEre_CAF1 12684 90 - 1 UGCUCCCUACGAGAC--------------CGA-AAGGGGAAAUGUAUUAGAAACGGAAACAGCUCAAGGGAAACACUUGAUGGGGCAAAAUACGAUUACGAUUAC----- ((((((.((((...(--------------(..-..)).....))))........(....)...((((((....).))))).))))))..................----- ( -22.40) >DroYak_CAF1 13049 90 - 1 UGCUUUCUACGAGAA--------------CGA-AAGGGGAAAUGUAUUAGAAACGGAAACAGCUCAAGGGAAACACUUGAUGGGGCAAAAUACGAUUACGAUUAC----- ..(((((........--------------.))-)))......((((((......(....).((((((((....).)))))....))..))))))...........----- ( -16.00) >DroMoj_CAF1 16139 85 - 1 UGCC----ACCGACA--------------CG------CAAAAUGUAUUAGAAACGGAAACAGCUCAAGGGAAACACUUGA-GCAGCAAAAUACGAUUACGAUAAAGGGGC .(((----.((....--------------..------.....((((((......(....).((((((((....).)))))-)).....))))))...........))))) ( -25.35) >DroPer_CAF1 57449 105 - 1 UGCCCUGGGCCAGCGUGGCGGGGGGCAGGCGAGGCGGGGCAAUGUAUUAGAAACGGAAACAGCUCGAGGGAAACACUUGAAGAAGCAAAAUACGAUUACGAUUAC----- ((((((..(((.((.((.(....).)).))..))))))))).((((((......(....).((((((((....).)))))....))..))))))...........----- ( -34.40) >consensus UGCCCUCUACCAGAA______________CGA_AAGGGGAAAUGUAUUAGAAACGGAAACAGCUCAAGGGAAACACUUGAUGGAGCAAAAUACGAUUACGAUUAC_____ ..........................................((((((......(....).((((((((....).)))))....))..))))))................ (-13.32 = -13.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:18 2006