Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,501,942 – 15,502,041 |
Length | 99 |
Max. P | 0.593902 |
Location | 15,501,942 – 15,502,041 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.25 |
Mean single sequence MFE | -19.72 |
Consensus MFE | -14.10 |
Energy contribution | -15.30 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.72 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15501942 99 - 22407834 CCAACAGGAUGCAUAUUUAUGAUUGCACACACACACACUCACACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU ......(..((((..........))))..)........................--................(((((((((.(......)))))))))).. ( -20.40) >DroPse_CAF1 52392 75 - 1 CCAACAGAAUGCAUAUUUAUGAUUGCGCACAGAUA------CACAU-------------UCCUGACCAGGCACAAGGGCAGUCUGAUUGG-------UGUU ((((((((.(((.(((((.((......)).)))))------.....-------------.(((...........)))))).)))).))))-------.... ( -15.30) >DroSec_CAF1 6762 93 - 1 CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU ......(..((((..........))))..).....------.............--................(((((((((.(......)))))))))).. ( -20.40) >DroSim_CAF1 6799 93 - 1 CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU ......(..((((..........))))..).....------.............--................(((((((((.(......)))))))))).. ( -20.40) >DroEre_CAF1 6635 89 - 1 CCAACAGGAUGCAUAUUUAUGAUUGCACAC----A------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCGUUGUU .((((.(..((((..........))))..)----.------.............--....(((((......)))))(((((.(.....).))))))))).. ( -19.40) >DroYak_CAF1 6976 93 - 1 CCAACAGGAUGCAUAUUUAUGAUUGCACACAC--A------CACACUACUCCCCAAAAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCCUUGUU ......(..((((..........))))..)..--.------...............................(((((((((.(.....).))))))))).. ( -22.40) >consensus CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA______CACACUACUCCCG__AAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCCUUGUU ......(..((((..........))))..)..........................................(((((((((.(......)))))))))).. (-14.10 = -15.30 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:17 2006