Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,496,062 – 15,496,162 |
Length | 100 |
Max. P | 0.664716 |
Location | 15,496,062 – 15,496,162 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.70 |
Mean single sequence MFE | -18.54 |
Consensus MFE | -8.36 |
Energy contribution | -10.64 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.16 |
Mean z-score | -1.95 |
Structure conservation index | 0.45 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15496062 100 + 22407834 CCACAUGCACUCUCUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGACUGGAGUACGACCCCAAAGC--AAACACA- .....(((.............(((...(......)...)))(((((..((((................))))...)))))...........))--)......- ( -16.19) >DroSec_CAF1 940 93 + 1 CCAC------UUUGUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCUCAAACC--AAACAC-- ....------.(((((.(((((((((((.......(((((((....))).......)))).......))))))))))).))))).........--......-- ( -21.05) >DroSim_CAF1 953 91 + 1 CCAC------U--GUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCCCAAACC--AAACAC-- ....------(--(((.(((((((((((.......(((((((....))).......)))).......))))))))))).))))..........--......-- ( -19.95) >DroEre_CAF1 908 83 + 1 -------UGAUCUAUAAUCUAGUCAGUGUCCCUUCUGCGGGACUCCUGCACUCAUUCGGAAUUUUCCUAAAGAC-----------CCCAAACC--AAACACAC -------..........(((((((((.(((((......)))))..))).))).....(((....)))...))).-----------........--........ ( -15.00) >DroYak_CAF1 908 98 + 1 UUA----UACUCUGUAAUUUAGCCAGUGUCUGUUCUUUGGCACUCCUGCACUCAAUCGAAACUUUCCUAGUGGCUGGUGUACGG-CCCAAACCCCAAACACCA ...----.............((((((((((........))))))................(((.....)))))))(((((..((-........))..))))). ( -20.50) >consensus CCAC______UCUGUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCCCAAACC__AAACAC__ .............(((.(((((((((((.......(((((...............))))).......))))))))))).)))..................... ( -8.36 = -10.64 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:16 2006