Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,678,842 – 1,678,951 |
Length | 109 |
Max. P | 0.629270 |
Location | 1,678,842 – 1,678,951 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.09 |
Mean single sequence MFE | -26.95 |
Consensus MFE | -23.02 |
Energy contribution | -24.15 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.85 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1678842 109 + 22407834 GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUGGGCUCAAAGUUAUCGUGUCUGUGAGUUU--AGAAUAGAACACAAUUGUGUCUC ((.((((.((((...(((((..((((((((((.(((.---------..(((..((.........)).)))))).))))))).)))..)))))...--)))).)))).))........... ( -26.60) >DroSec_CAF1 5238 111 + 1 GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUGGGGUCAAAGUUAUCGUGUCUGUAAGUUUAUAGAAUAGAAUACAAUCGUGUCUC (((((((.((((...(((((..((((((((((.((((---------(.((...)).....((....))))))).))))))).)))..))))).....)))).)))))))........... ( -30.00) >DroSim_CAF1 6219 111 + 1 GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUCGGGUCAAAGUUAUCGUGUCUGUAAGUUUAUAGAAUAGAACACAAUCGUGUCUC ((.((((.((((...(((((..((((((((((.(((.---------..((...)).....(((....)))))).))))))).)))..))))).....)))).)))).))........... ( -24.90) >DroYak_CAF1 6386 118 + 1 GAAUACUUCUCUCUUUCUACUUACAGGUAGCUAUGCUUUCUGUGGCCAGCCAAGCGUUUUCCAACUGGGGUCAAAGCUAUCAUGUCUGUGAGUUU--AGAAUAGAAUACAAACAGUCGCC .........(((..((((((((((((..(.....((((....(((((.((...)).....((....))))))))))).....)..))))))))..--)))).)))............... ( -26.30) >consensus GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU_________CAGCCAAGCGUUUUCCCAGUGGGGUCAAAGUUAUCGUGUCUGUAAGUUU__AGAAUAGAACACAAUCGUGUCUC (((((((.((((......((((((((((((((.((((...........((...)).....((.....)))))).)))))).....))))))))....)))).)))))))........... (-23.02 = -24.15 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:55 2006