Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,483,216 – 15,483,327 |
Length | 111 |
Max. P | 0.901699 |
Location | 15,483,216 – 15,483,327 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -21.11 |
Energy contribution | -21.42 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.09 |
Mean z-score | -2.22 |
Structure conservation index | 0.65 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15483216 111 - 22407834 UGAGAUUU-UUGGCGCCUG--AUUUUGGGAAUACCAAAUUCAACGGGCACUCCAGUGAAAUGCAAAUA---UUCUAAUGCAUAG-AGCUUGAAAGGUGCCAGAAAGUCGGAAAUAUGC .((..(((-((((((((((--(.(((((.....))))).))..(((((((....))...(((((....---......)))))..-.)))))..)))))))))))).)).......... ( -34.50) >DroVir_CAF1 259654 103 - 1 UGAGAUAU-UUGGCGCCGA--CUCUCGAGCAUACGAAAUGCG------------GAUAAAUGCAAACACAAUUCUAAUGCAAGGCACAUCGAAAGGUGCCAGCAAGUCGGCGAAAUUC ........-....((((((--((..(..((((..(((.((.(------------............).)).)))..))))..(((((..(....)))))).)..))))))))...... ( -30.60) >DroSec_CAF1 221063 111 - 1 UGAGAUUU-UUGGCGCCUG--AUUUCGGGAAUACAAGUUUCAACGGGCACUCCAGUGAAAUGCAAAUA---UUCAAAUGCAGAG-AGCUUGAAAGGUGCCAGAAAGUCGGAAAUAUGC .((..(((-(((((((((.--......(((((....)))))..(((((.(((........((((....---......)))))))-.)))))..)))))))))))).)).......... ( -30.50) >DroSim_CAF1 228307 111 - 1 UGAGAUUU-UUGGCGCCUG--AUUUCGGGAAUACAAAAUUCAACGGGCACUCCAGUGAAAUGCAAAUA---UUCUAAUGCAGAG-AGCUUGAAAGGUGCCAGAAAGUCGGAAAUAUGC .((..(((-(((((((((.--.......((((.....))))..(((((.(((........((((....---......)))))))-.)))))..)))))))))))).)).......... ( -29.80) >DroYak_CAF1 230757 111 - 1 UGAGAUUU-UUGGCGCCUG--AUUUCGGGAAUACAAAAUUCAACUGGCACUCCAGCGAAAUGCAAAUC---CUCUAAUGCAGAG-AGCUUGAAAGGUGCCAGAAAGUCGGAAAAAUGC .....(((-(((((.((((--....))))..............(((((((((.(((....((((....---......))))...-.))).))...)))))))...))))))))..... ( -32.00) >DroAna_CAF1 238039 114 - 1 UGAGAUUUUUUGGCGCCUGGGAUUUCUGGAAUACGAAAUCUAGUUGUCCAGCUAUCGAAAUGCAAAUC---CUCUAAUGCAGAG-AGCUUGGAAGGUGCCAGCAAGUCGGUAGAAUUC ...(((((.(((((((((.(((((((........))))))).....(((((((.((....((((....---......)))))).-))).))))))))))))).))))).......... ( -36.40) >consensus UGAGAUUU_UUGGCGCCUG__AUUUCGGGAAUACAAAAUUCAACGGGCACUCCAGUGAAAUGCAAAUA___UUCUAAUGCAGAG_AGCUUGAAAGGUGCCAGAAAGUCGGAAAAAUGC ...(((((.(((((((((..........((((.....))))...................((((.............))))............))))))))).))))).......... (-21.11 = -21.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:08 2006