Locus 5435

Sequence ID 2L_DroMel_CAF1
Location 15,477,413 – 15,477,508
Length 95
Max. P 0.945113
window8630

overview

Window 0

Location 15,477,413 – 15,477,508
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -26.73
Consensus MFE -24.65
Energy contribution -24.52
Covariance contribution -0.13
Combinations/Pair 1.21
Mean z-score -1.47
Structure conservation index 0.92
SVM decision value 1.35
SVM RNA-class probability 0.945113
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15477413 95 + 22407834
ACUAAGCUGAUUAGGGGACAUCGCGUGUGUCCUGCUUAUUGGCCACACUAAACACUCUGUUUAGCCUAUUACACGUGUCUCCUAAAUGAAGUGUG
.....(((..((((((((((.((.(((((.((........)).))).((((((.....))))))......)).))))))))))))....)))... ( -28.70)
>DroSec_CAF1 215359 95 + 1
ACUAAGCUGAUUAGGGGACAUCGCGUGUGUCCUGCUUGUUGGCCACACUAAACACUCUGUUUAGCCUAUUACACGUGUCUCCUAAAUGAAGUGUG
.....(((..((((((((((.((.(((((.((........)).))).((((((.....))))))......)).))))))))))))....)))... ( -28.70)
>DroSim_CAF1 222601 95 + 1
ACUAAGCUGAUUAGGGGACAUCGCGUGUGUCCUGCUUGUUGGCCACACUAAACACUCUGUUUAGCCUAUUACACGUGUCUCCUAAAUGAAGUGUG
.....(((..((((((((((.((.(((((.((........)).))).((((((.....))))))......)).))))))))))))....)))... ( -28.70)
>DroEre_CAF1 226060 94 + 1
ACUAAGCUGAUUAGG-GACAACGCGUGUGUCCUGCGUGCUGGCCACACUAAACACUCUGUUUAGCCUAUUACACGUGUCUCCUAAAUGAAGUGUG
.....(((.(((.((-((..(((((((((....(((((.....)))..(((((.....)))))))....))))))))).)))).)))..)))... ( -24.90)
>DroYak_CAF1 224511 95 + 1
ACUAAGCUGAUUAGGGGACAUCGCGUGUGUCCUGCUUGUUGGCCACACUAAAUACUCUGUUUAGCCUAUUACACGUGUCUUCUAAAUGAAGUGUG
.....(((..((((((((((.((.(((((.((........)).))).((((((.....))))))......)).))))))))))))....)))... ( -23.80)
>DroAna_CAF1 231409 95 + 1
ACUAAGCUGAUUAGCGGGCAUUGCGUGUGUCCUGCUUGUUGGCAGCUCUAAACAUUCUGUUUAGCCUAUUAAAUGUGUCUCCUAAAUGAAGUGUG
.....((..((.(((((((((.....))).)))))).))..))........(((((..((((((..(((.....)))....))))))..))))). ( -25.60)
>consensus
ACUAAGCUGAUUAGGGGACAUCGCGUGUGUCCUGCUUGUUGGCCACACUAAACACUCUGUUUAGCCUAUUACACGUGUCUCCUAAAUGAAGUGUG
.....(((..((((((((((.((.(((((.((........)).))).((((((.....))))))......)).))))))))))))....)))... (-24.65 = -24.52 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:07 2006