Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,475,734 – 15,475,832 |
Length | 98 |
Max. P | 0.843068 |
Location | 15,475,734 – 15,475,832 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -16.69 |
Energy contribution | -17.08 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.32 |
Mean z-score | -1.67 |
Structure conservation index | 0.67 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15475734 98 + 22407834 AUGUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGUCACAUCCAUGCACAUAUC ((((((......((.-....)).(((....)))))))))..((((((((.((((........)))).)))-))))-)..((((((......)).))))... ( -22.30) >DroVir_CAF1 250682 95 + 1 AUGCCUCCCGGUCCU-ACCUGACGGGCGUUCCCGGCUAUUUCGGUUAUUACGUGUGUUAUUCCACACAAU-UACCAUCCAUGGCAUCUCCAGGCA----AC .(((((...((....-.))...((((....))))(((((...(((.(((..(((((......))))))))-.)))....)))))......)))))----.. ( -25.70) >DroSec_CAF1 213716 98 + 1 AUGUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGACACAUCCAUGCGCAUAUC ((((((......((.-....)).(((....)))))))))...(((((((.((((........)))).)))-))))-((((((.......)))).))..... ( -25.90) >DroEre_CAF1 224386 98 + 1 ACCUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGACACAUCCAGGCACAUAUC ...............-.(((((((.(((((...((......((((((((.((((........)))).)))-))))-)))))))).)).)))))........ ( -25.00) >DroMoj_CAF1 262095 95 + 1 AUGCCUCCCGAUCCU-ACCUGACGGGCGUUCCCGACCAUUUCGGUUAUUACGUGUGUUAUUCCGCACAAU-UACCAACCAUGGCAUCCACAGGCA----AC .(((((...(((((.-......((((....))))........((((......(((((......)))))..-....))))..)).)))...)))))----.. ( -25.30) >DroAna_CAF1 229621 92 + 1 ----UCACACAUCCUGACCUGGUGGGUCAUCCCGGAUACUCUGGUUAUUACGUGUGUUAUUCCGCGCAAUUAACC-GCCAUGACACAUCCAGGCAC----C ----..........((.(((((((.(((((..(((........((....))(((((......)))))......))-)..))))).)).))))))).----. ( -25.80) >consensus AUGUCCUCACAUCCU_ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU_GACC_GCCAUGACACAUCCAGGCAC___UC .................(((((...(((((.((((.....)))).......(((((......)))))............)))))....)))))........ (-16.69 = -17.08 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:04 2006