Locus 5431

Sequence ID 2L_DroMel_CAF1
Location 15,471,215 – 15,471,309
Length 94
Max. P 0.526522
window8625

overview

Window 5

Location 15,471,215 – 15,471,309
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 85.97
Mean single sequence MFE -23.80
Consensus MFE -20.03
Energy contribution -20.42
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.526522
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15471215 94 - 22407834
CUACGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCAAAA-------------AACUGCAGCACAGAUGCAACUGGUCACAAUGCAUCAGCUGUAAGGAAAACACCUU
.((((((.......(((((.....)))))..(((((...-------------...)))))....((((((..((....)).)))))).))))))(((......))). ( -24.30)
>DroSec_CAF1 209233 94 - 1
CUACGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCAAAA-------------AACUGCAGCACAGAUGCAACUGCUCACAAUGCAUCAGCUGUAAGGCAAACACCUU
....(((.......(((((.....)))))..((((....-------------...((((((...((((((..((....)).)))))).))))))..))))..))).. ( -24.90)
>DroSim_CAF1 215349 94 - 1
CUACGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCAAAA-------------AACUGCAGCACAGAUGCAACUGCUCACAAUGCAUCAGCUGUAAGGAAAACACCUU
.((((((.......(((((.....)))))..(((((...-------------...)))))....((((((..((....)).)))))).))))))(((......))). ( -23.00)
>DroEre_CAF1 219914 94 - 1
CUUCGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCAAAA-------------AACUGCAGCCCAGAUGCAACUGGCCACAAUGCAUCAGCUGUAAGGAAAACACCUU
....(((.......(((((.....)))))..........-------------...((((((...((((((..((....)).)))))).))))))........))).. ( -24.10)
>DroYak_CAF1 217550 93 - 1
CUACGGUAAUCAGAGCGCGUUUCUUGUGCAACUGCAAA--------------AACUGCAGCCCAGAUGCAACUAGCUACAAUGCAUCAGCUGUAAGGAGAACACCUU
.((((((.......(((((.....)))))..(((((..--------------...)))))....((((((...........)))))).))))))(((......))). ( -24.70)
>DroAna_CAF1 224771 106 - 1
CCUUGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCGAAAAAAAUAAGAAGAAAAAAGCAGUGCAGAUGUGGCAGUUCACAAAGAAUCAGCUGAGAGGA-AACACCUU
....(((..((..(((..(.(((((.((((.((((.....................))))))))..(((((....)))))))))).).)))..))(..-..)))).. ( -21.80)
>consensus
CUACGGUAAUCAGAGCGCGUUUCUUGUGCAAUUGCAAAA_____________AACUGCAGCACAGAUGCAACUGGUCACAAUGCAUCAGCUGUAAGGAAAACACCUU
....(((.......(((((.....)))))..........................((((((...((((((...........)))))).))))))........))).. (-20.03 = -20.42 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:02 2006