Locus 5429

Sequence ID 2L_DroMel_CAF1
Location 15,466,782 – 15,466,891
Length 109
Max. P 0.909530
window8622

overview

Window 2

Location 15,466,782 – 15,466,891
Length 109
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 94.25
Mean single sequence MFE -38.58
Consensus MFE -31.86
Energy contribution -31.30
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value 1.07
SVM RNA-class probability 0.909530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15466782 109 - 22407834
GGUGAGUUUUCAUCAAUUUCUCGGAU--UCGGGUACGGGCCCACAACAGUUGGCCAAGUGCCCCUUUUUGACCAAAGGG----UCAGCGGUCGGUCGGCCGACAGUUUUCCCUAA
((((......))))......(((((.--..((((((.((((.((....)).))))..))))))...)))))....((((----..(((.(((((....))))).)))..)))).. ( -42.40)
>DroSec_CAF1 204850 109 - 1
AGUCAGUUUUCAUCAAUUUCUCGGAU--UCGGGUACGGGCCCACAACAGUUGGUCAAAUGCCCCUUUUUGACCAAAGGG----UCAGCGGUCGGUCGGCCGACAGUUUUCCCUAA
..........................--..((((....)))).......(((((((((........)))))))))((((----..(((.(((((....))))).)))..)))).. ( -34.60)
>DroSim_CAF1 210889 109 - 1
AGUCAGUUUUCAUCAAUUUCUCGGAU--UCGGGUACGGGCCCACAACAGUUGGCCAAAUGCCCCUUUUUGACCAAAGGG----UCAGCGGUCGGUUGGCCGACAGUUUUCCCUAA
.(((((..(((...........))).--.)(((((..((((.((....)).))))...))))).....))))...((((----..(((.(((((....))))).)))..)))).. ( -37.20)
>DroEre_CAF1 215583 115 - 1
AGUCAGUUUUCAUCAAUUUCUCGGAUACUCGGGUACGGGCCCACAACAGUUGGCCAAAUGCCCCUUUCUGACCAAAGGGUCGGUCAGCGGUCGGUUGGCCGGCCGUUUUCCCUAA
.(((((.....(((.........)))....(((((..((((.((....)).))))...)))))....))))).(((.(((((((((((.....))))))))))).)))....... ( -42.10)
>DroYak_CAF1 213021 109 - 1
AGUCAGUUUUCAUCAGUUUCUCGGAU--UCGGGUACGGGCCCACAACAGUUGGCCAAAUGCCCCUUUUUGACCAAAGGG----UCAGCGGUCGGUUGGCCGGCAGUUUUCCCUAA
.(((((..(((...........))).--.)(((((..((((.((....)).))))...))))).....))))...((((----..(((.(((((....))))).)))..)))).. ( -36.60)
>consensus
AGUCAGUUUUCAUCAAUUUCUCGGAU__UCGGGUACGGGCCCACAACAGUUGGCCAAAUGCCCCUUUUUGACCAAAGGG____UCAGCGGUCGGUUGGCCGACAGUUUUCCCUAA
....................(((((.....(((((..((((.((....)).))))...)))))...)))))....((((......(((.(((((....))))).)))..)))).. (-31.86 = -31.30 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:00 2006